Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02915

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02905 and AO356_02910 are separated by 115 nucleotidesAO356_02910 and AO356_02915 are separated by 180 nucleotidesAO356_02915 and AO356_02920 are separated by 166 nucleotides AO356_02905: AO356_02905 - amino acid ABC transporter substrate-binding protein, at 650,953 to 651,729 _02905 AO356_02910: AO356_02910 - TetR family transcriptional regulator, at 651,845 to 652,471 _02910 AO356_02915: AO356_02915 - terpene utilization protein AtuA, at 652,652 to 654,442 _02915 AO356_02920: AO356_02920 - acetyl-CoA carboxylase carboxyltransferase subunit, at 654,609 to 656,225 _02920 Position (kb) 652 653 654 655Strain fitness (log2 ratio) -2 -1 0 1 2at 651.753 kb on + strandat 651.753 kb on + strandat 651.754 kb on - strandat 651.754 kb on - strandat 651.781 kb on + strandat 651.781 kb on + strandat 651.781 kb on + strandat 651.782 kb on - strandat 651.782 kb on - strandat 651.782 kb on - strandat 651.782 kb on - strandat 651.782 kb on - strandat 651.792 kb on + strandat 651.793 kb on - strandat 651.793 kb on - strandat 651.811 kb on - strandat 651.830 kb on + strandat 651.830 kb on + strandat 651.831 kb on - strandat 651.847 kb on - strandat 651.928 kb on + strand, within AO356_02910at 651.988 kb on + strand, within AO356_02910at 651.989 kb on - strand, within AO356_02910at 651.989 kb on - strand, within AO356_02910at 651.991 kb on - strand, within AO356_02910at 651.991 kb on - strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.042 kb on + strand, within AO356_02910at 652.042 kb on + strand, within AO356_02910at 652.042 kb on + strand, within AO356_02910at 652.043 kb on - strand, within AO356_02910at 652.043 kb on - strand, within AO356_02910at 652.043 kb on - strand, within AO356_02910at 652.043 kb on - strand, within AO356_02910at 652.043 kb on - strand, within AO356_02910at 652.098 kb on + strand, within AO356_02910at 652.099 kb on - strand, within AO356_02910at 652.107 kb on - strand, within AO356_02910at 652.483 kb on + strandat 652.484 kb on - strandat 652.544 kb on - strandat 652.619 kb on + strandat 652.746 kb on - strandat 652.746 kb on - strandat 652.746 kb on - strandat 652.760 kb on + strandat 652.761 kb on - strandat 652.966 kb on - strand, within AO356_02915at 653.093 kb on + strand, within AO356_02915at 653.223 kb on - strand, within AO356_02915at 653.223 kb on - strand, within AO356_02915at 653.296 kb on + strand, within AO356_02915at 653.321 kb on + strand, within AO356_02915at 653.439 kb on - strand, within AO356_02915at 653.463 kb on - strand, within AO356_02915at 653.762 kb on + strand, within AO356_02915at 653.762 kb on + strand, within AO356_02915at 653.762 kb on + strand, within AO356_02915at 653.762 kb on + strand, within AO356_02915at 653.762 kb on + strand, within AO356_02915at 654.185 kb on + strand, within AO356_02915at 654.186 kb on - strand, within AO356_02915at 654.282 kb on - strandat 654.405 kb on + strandat 654.462 kb on + strandat 654.903 kb on + strand, within AO356_02920at 654.903 kb on + strand, within AO356_02920at 654.903 kb on + strand, within AO356_02920at 654.904 kb on - strand, within AO356_02920at 655.068 kb on + strand, within AO356_02920at 655.121 kb on + strand, within AO356_02920at 655.121 kb on + strand, within AO356_02920at 655.121 kb on + strand, within AO356_02920at 655.121 kb on + strand, within AO356_02920at 655.121 kb on + strand, within AO356_02920at 655.121 kb on + strand, within AO356_02920at 655.121 kb on + strand, within AO356_02920at 655.121 kb on + strand, within AO356_02920at 655.121 kb on + strand, within AO356_02920at 655.122 kb on - strand, within AO356_02920at 655.122 kb on - strand, within AO356_02920at 655.122 kb on - strand, within AO356_02920at 655.122 kb on - strand, within AO356_02920at 655.122 kb on - strand, within AO356_02920at 655.122 kb on - strand, within AO356_02920at 655.207 kb on - strand, within AO356_02920at 655.207 kb on - strand, within AO356_02920at 655.344 kb on + strand, within AO356_02920at 655.344 kb on + strand, within AO356_02920at 655.345 kb on - strand, within AO356_02920at 655.372 kb on + strand, within AO356_02920at 655.372 kb on + strand, within AO356_02920at 655.372 kb on + strand, within AO356_02920

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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651,753 + -1.0
651,753 + +1.4
651,754 - +0.3
651,754 - +1.0
651,781 + +0.9
651,781 + +1.1
651,781 + +0.8
651,782 - -0.8
651,782 - +0.5
651,782 - +0.5
651,782 - +0.2
651,782 - -0.6
651,792 + +0.0
651,793 - -0.8
651,793 - -2.2
651,811 - +0.2
651,830 + +0.5
651,830 + +1.2
651,831 - -1.3
651,847 - -0.8
651,928 + AO356_02910 0.13 +0.3
651,988 + AO356_02910 0.23 +0.4
651,989 - AO356_02910 0.23 -0.3
651,989 - AO356_02910 0.23 -1.3
651,991 - AO356_02910 0.23 -0.9
651,991 - AO356_02910 0.23 -0.7
652,038 + AO356_02910 0.31 -0.1
652,038 + AO356_02910 0.31 +1.2
652,038 + AO356_02910 0.31 +0.1
652,038 + AO356_02910 0.31 +0.6
652,038 + AO356_02910 0.31 +0.5
652,038 + AO356_02910 0.31 -0.6
652,038 + AO356_02910 0.31 +0.7
652,038 + AO356_02910 0.31 +0.9
652,038 + AO356_02910 0.31 -0.4
652,038 + AO356_02910 0.31 +0.4
652,038 + AO356_02910 0.31 -0.2
652,039 - AO356_02910 0.31 +0.5
652,039 - AO356_02910 0.31 -0.4
652,039 - AO356_02910 0.31 +0.3
652,039 - AO356_02910 0.31 +0.1
652,039 - AO356_02910 0.31 -0.4
652,039 - AO356_02910 0.31 -0.9
652,039 - AO356_02910 0.31 -0.6
652,039 - AO356_02910 0.31 -1.1
652,039 - AO356_02910 0.31 -0.6
652,039 - AO356_02910 0.31 -0.0
652,039 - AO356_02910 0.31 -0.1
652,039 - AO356_02910 0.31 -1.2
652,039 - AO356_02910 0.31 -0.5
652,039 - AO356_02910 0.31 +1.4
652,042 + AO356_02910 0.31 +0.3
652,042 + AO356_02910 0.31 +1.1
652,042 + AO356_02910 0.31 +0.1
652,043 - AO356_02910 0.32 -0.7
652,043 - AO356_02910 0.32 -0.0
652,043 - AO356_02910 0.32 -0.0
652,043 - AO356_02910 0.32 +0.6
652,043 - AO356_02910 0.32 -0.6
652,098 + AO356_02910 0.40 -1.9
652,099 - AO356_02910 0.41 -1.8
652,107 - AO356_02910 0.42 -0.6
652,483 + +0.5
652,484 - -0.4
652,544 - -0.7
652,619 + +0.6
652,746 - +0.1
652,746 - -0.5
652,746 - -0.9
652,760 + -2.0
652,761 - +0.0
652,966 - AO356_02915 0.18 -1.6
653,093 + AO356_02915 0.25 -0.1
653,223 - AO356_02915 0.32 -0.1
653,223 - AO356_02915 0.32 -2.0
653,296 + AO356_02915 0.36 +0.5
653,321 + AO356_02915 0.37 -0.1
653,439 - AO356_02915 0.44 +0.1
653,463 - AO356_02915 0.45 -0.8
653,762 + AO356_02915 0.62 -0.4
653,762 + AO356_02915 0.62 -1.2
653,762 + AO356_02915 0.62 -0.6
653,762 + AO356_02915 0.62 -0.9
653,762 + AO356_02915 0.62 +0.1
654,185 + AO356_02915 0.86 +1.3
654,186 - AO356_02915 0.86 -0.5
654,282 - +0.6
654,405 + +2.6
654,462 + +0.1
654,903 + AO356_02920 0.18 +0.3
654,903 + AO356_02920 0.18 -1.1
654,903 + AO356_02920 0.18 -1.3
654,904 - AO356_02920 0.18 +0.8
655,068 + AO356_02920 0.28 +0.3
655,121 + AO356_02920 0.32 +0.2
655,121 + AO356_02920 0.32 -1.2
655,121 + AO356_02920 0.32 +0.0
655,121 + AO356_02920 0.32 -1.0
655,121 + AO356_02920 0.32 +1.0
655,121 + AO356_02920 0.32 +1.4
655,121 + AO356_02920 0.32 +1.1
655,121 + AO356_02920 0.32 -0.9
655,121 + AO356_02920 0.32 +0.7
655,122 - AO356_02920 0.32 -0.3
655,122 - AO356_02920 0.32 -0.8
655,122 - AO356_02920 0.32 -0.4
655,122 - AO356_02920 0.32 -0.9
655,122 - AO356_02920 0.32 +0.3
655,122 - AO356_02920 0.32 -0.7
655,207 - AO356_02920 0.37 -0.7
655,207 - AO356_02920 0.37 +2.2
655,344 + AO356_02920 0.45 -0.4
655,344 + AO356_02920 0.45 +0.7
655,345 - AO356_02920 0.46 +0.8
655,372 + AO356_02920 0.47 -0.4
655,372 + AO356_02920 0.47 +0.3
655,372 + AO356_02920 0.47 -0.8

Or see this region's nucleotide sequence