Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00305 and AO356_00310 are separated by 211 nucleotides AO356_00310 and AO356_00315 overlap by 8 nucleotides
AO356_00305: AO356_00305 - hypothetical protein, at 56,659 to 57,279
_00305
AO356_00310: AO356_00310 - hypothetical protein, at 57,491 to 58,111
_00310
AO356_00315: AO356_00315 - nucleotidyltransferase, at 58,104 to 59,387
_00315
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.560 kb on - strand at 56.560 kb on - strand at 56.579 kb on - strand at 56.595 kb on + strand at 56.596 kb on - strand at 56.716 kb on + strand at 56.717 kb on - strand at 56.787 kb on + strand, within AO356_00305 at 56.850 kb on + strand, within AO356_00305 at 56.851 kb on - strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.886 kb on - strand, within AO356_00305 at 56.886 kb on - strand, within AO356_00305 at 56.886 kb on - strand, within AO356_00305 at 56.903 kb on + strand, within AO356_00305 at 56.903 kb on + strand, within AO356_00305 at 56.903 kb on + strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.927 kb on + strand, within AO356_00305 at 56.928 kb on - strand, within AO356_00305 at 56.944 kb on + strand, within AO356_00305 at 56.944 kb on + strand, within AO356_00305 at 56.965 kb on + strand, within AO356_00305 at 56.986 kb on + strand, within AO356_00305 at 56.986 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.991 kb on - strand, within AO356_00305 at 56.991 kb on - strand, within AO356_00305 at 56.991 kb on - strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.994 kb on - strand, within AO356_00305 at 56.994 kb on - strand, within AO356_00305 at 56.994 kb on - strand, within AO356_00305 at 56.997 kb on + strand, within AO356_00305 at 57.142 kb on - strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.186 kb on - strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.201 kb on - strand, within AO356_00305 at 57.203 kb on + strand, within AO356_00305 at 57.204 kb on - strand, within AO356_00305 at 57.234 kb on + strand at 57.234 kb on + strand at 57.234 kb on + strand at 57.234 kb on + strand at 57.235 kb on - strand at 57.235 kb on - strand at 57.241 kb on + strand at 57.242 kb on - strand at 57.267 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.320 kb on - strand at 57.320 kb on - strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.338 kb on + strand at 57.338 kb on + strand at 57.338 kb on + strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.347 kb on + strand at 57.348 kb on - strand at 57.394 kb on - strand at 57.394 kb on - strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.435 kb on - strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.454 kb on - strand at 57.483 kb on + strand at 57.484 kb on - strand at 57.484 kb on - strand at 57.484 kb on - strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.489 kb on - strand at 57.489 kb on - strand at 57.489 kb on - strand at 57.490 kb on + strand at 57.490 kb on + strand at 57.533 kb on + strand at 57.534 kb on - strand at 57.546 kb on - strand at 57.572 kb on + strand, within AO356_00310 at 57.707 kb on + strand, within AO356_00310 at 57.708 kb on - strand, within AO356_00310 at 57.708 kb on - strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.719 kb on + strand, within AO356_00310 at 57.720 kb on - strand, within AO356_00310 at 57.720 kb on - strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.741 kb on - strand, within AO356_00310 at 57.741 kb on - strand, within AO356_00310 at 57.846 kb on + strand, within AO356_00310 at 57.846 kb on + strand, within AO356_00310 at 58.015 kb on - strand, within AO356_00310 at 58.109 kb on + strand at 58.109 kb on + strand at 58.109 kb on + strand at 58.110 kb on - strand at 58.209 kb on + strand at 58.212 kb on + strand at 58.212 kb on + strand at 58.213 kb on - strand at 58.213 kb on - strand at 58.218 kb on - strand at 58.249 kb on + strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.257 kb on + strand, within AO356_00315 at 58.257 kb on + strand, within AO356_00315 at 58.326 kb on + strand, within AO356_00315 at 58.327 kb on - strand, within AO356_00315 at 58.381 kb on + strand, within AO356_00315 at 58.381 kb on + strand, within AO356_00315 at 58.381 kb on + strand, within AO356_00315 at 58.381 kb on + strand, within AO356_00315 at 58.382 kb on - strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.461 kb on + strand, within AO356_00315 at 58.462 kb on - strand, within AO356_00315 at 58.462 kb on - strand, within AO356_00315 at 58.477 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.512 kb on + strand, within AO356_00315 at 58.693 kb on - strand, within AO356_00315 at 58.719 kb on + strand, within AO356_00315 at 58.773 kb on + strand, within AO356_00315 at 58.774 kb on - strand, within AO356_00315 at 58.847 kb on + strand, within AO356_00315 at 58.847 kb on + strand, within AO356_00315 at 58.886 kb on - strand, within AO356_00315 at 58.886 kb on - strand, within AO356_00315 at 58.931 kb on + strand, within AO356_00315 at 58.959 kb on + strand, within AO356_00315 at 58.959 kb on + strand, within AO356_00315 at 58.959 kb on + strand, within AO356_00315 at 58.960 kb on - strand, within AO356_00315
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 56,560 - +0.4 56,560 - +0.4 56,579 - -0.1 56,595 + -1.2 56,596 - -0.2 56,716 + -0.9 56,717 - +0.4 56,787 + AO356_00305 0.21 -1.8 56,850 + AO356_00305 0.31 +1.1 56,851 - AO356_00305 0.31 +0.4 56,885 + AO356_00305 0.36 +0.2 56,885 + AO356_00305 0.36 +0.0 56,885 + AO356_00305 0.36 +0.2 56,885 + AO356_00305 0.36 -0.0 56,886 - AO356_00305 0.37 +0.8 56,886 - AO356_00305 0.37 -0.2 56,886 - AO356_00305 0.37 -0.2 56,903 + AO356_00305 0.39 -2.4 56,903 + AO356_00305 0.39 +0.1 56,903 + AO356_00305 0.39 -0.8 56,904 - AO356_00305 0.39 +0.7 56,904 - AO356_00305 0.39 +0.1 56,904 - AO356_00305 0.39 +0.4 56,904 - AO356_00305 0.39 +1.3 56,927 + AO356_00305 0.43 +0.3 56,928 - AO356_00305 0.43 +0.3 56,944 + AO356_00305 0.46 +0.3 56,944 + AO356_00305 0.46 -1.3 56,965 + AO356_00305 0.49 +0.1 56,986 + AO356_00305 0.53 +1.2 56,986 + AO356_00305 0.53 +1.1 56,990 + AO356_00305 0.53 +2.3 56,990 + AO356_00305 0.53 -0.6 56,990 + AO356_00305 0.53 +0.3 56,990 + AO356_00305 0.53 +0.5 56,991 - AO356_00305 0.53 +0.1 56,991 - AO356_00305 0.53 +0.0 56,991 - AO356_00305 0.53 -0.1 56,993 + AO356_00305 0.54 -0.6 56,993 + AO356_00305 0.54 -1.0 56,993 + AO356_00305 0.54 -0.9 56,993 + AO356_00305 0.54 -0.7 56,993 + AO356_00305 0.54 +0.5 56,993 + AO356_00305 0.54 -1.0 56,994 - AO356_00305 0.54 -0.1 56,994 - AO356_00305 0.54 +0.7 56,994 - AO356_00305 0.54 +1.0 56,997 + AO356_00305 0.54 -0.1 57,142 - AO356_00305 0.78 -0.3 57,185 + AO356_00305 0.85 +0.5 57,185 + AO356_00305 0.85 +1.4 57,185 + AO356_00305 0.85 +0.4 57,185 + AO356_00305 0.85 +0.5 57,185 + AO356_00305 0.85 -0.5 57,186 - AO356_00305 0.85 +1.2 57,200 + AO356_00305 0.87 -0.6 57,200 + AO356_00305 0.87 -0.3 57,200 + AO356_00305 0.87 -0.0 57,200 + AO356_00305 0.87 -0.1 57,201 - AO356_00305 0.87 +1.6 57,203 + AO356_00305 0.88 -0.8 57,204 - AO356_00305 0.88 -0.0 57,234 + +0.2 57,234 + -1.1 57,234 + +1.4 57,234 + -0.1 57,235 - +0.9 57,235 - +0.7 57,241 + -0.1 57,242 - +1.0 57,267 + -2.3 57,317 + -0.7 57,317 + +0.7 57,317 + -0.1 57,317 + +0.8 57,317 + +1.6 57,318 - +1.3 57,318 - -1.0 57,318 - +0.4 57,318 - +2.0 57,320 - +0.4 57,320 - +0.2 57,329 + -0.6 57,329 + -0.6 57,329 + -0.0 57,329 + -1.1 57,338 + +0.5 57,338 + -0.6 57,338 + -1.1 57,339 - +0.2 57,339 - +0.3 57,339 - -1.7 57,339 - -2.2 57,347 + -0.7 57,348 - -1.2 57,394 - -0.7 57,394 - +0.5 57,434 + -0.3 57,434 + +0.7 57,434 + -0.3 57,434 + +2.0 57,434 + -1.0 57,434 + +1.0 57,434 + -0.0 57,435 - +0.3 57,436 + -0.8 57,436 + -1.5 57,436 + +2.1 57,436 + -0.2 57,436 + +1.1 57,437 - +1.3 57,437 - -0.2 57,437 - +1.3 57,437 - -0.2 57,437 - +0.1 57,437 - +2.6 57,437 - -0.6 57,437 - -0.5 57,438 + +1.1 57,438 + +1.7 57,438 + +0.5 57,438 + +0.5 57,438 + -0.2 57,439 - -0.5 57,439 - -0.7 57,439 - -0.3 57,439 - +0.8 57,439 - -2.7 57,439 - -0.6 57,439 - -1.1 57,439 - +0.3 57,439 - +0.0 57,439 - -0.7 57,439 - +0.4 57,439 - -0.0 57,439 - +1.0 57,454 - -2.3 57,483 + -0.8 57,484 - -1.2 57,484 - +0.8 57,484 - +0.5 57,488 + +0.7 57,488 + +0.9 57,488 + +0.0 57,488 + -1.6 57,488 + -0.9 57,489 - +0.2 57,489 - -0.8 57,489 - +0.7 57,490 + -0.4 57,490 + +0.5 57,533 + -0.9 57,534 - -0.1 57,546 - +1.9 57,572 + AO356_00310 0.13 +0.4 57,707 + AO356_00310 0.35 +0.3 57,708 - AO356_00310 0.35 -0.0 57,708 - AO356_00310 0.35 -0.0 57,716 + AO356_00310 0.36 -0.6 57,716 + AO356_00310 0.36 -0.4 57,716 + AO356_00310 0.36 -0.2 57,716 + AO356_00310 0.36 +0.9 57,717 - AO356_00310 0.36 +0.6 57,717 - AO356_00310 0.36 +0.7 57,717 - AO356_00310 0.36 +0.4 57,717 - AO356_00310 0.36 +0.4 57,719 + AO356_00310 0.37 +0.2 57,720 - AO356_00310 0.37 +1.2 57,720 - AO356_00310 0.37 -0.9 57,740 + AO356_00310 0.40 +1.2 57,740 + AO356_00310 0.40 +0.0 57,740 + AO356_00310 0.40 +0.6 57,741 - AO356_00310 0.40 -0.8 57,741 - AO356_00310 0.40 -0.5 57,846 + AO356_00310 0.57 +0.1 57,846 + AO356_00310 0.57 +0.7 58,015 - AO356_00310 0.84 +0.2 58,109 + -0.7 58,109 + +0.4 58,109 + +0.7 58,110 - -0.2 58,209 + -1.8 58,212 + +1.1 58,212 + -1.0 58,213 - -0.6 58,213 - -0.3 58,218 - +0.2 58,249 + AO356_00315 0.11 -0.1 58,250 - AO356_00315 0.11 +1.0 58,250 - AO356_00315 0.11 +0.2 58,250 - AO356_00315 0.11 -2.5 58,250 - AO356_00315 0.11 +0.5 58,257 + AO356_00315 0.12 -0.6 58,257 + AO356_00315 0.12 -0.1 58,326 + AO356_00315 0.17 +0.8 58,327 - AO356_00315 0.17 +0.8 58,381 + AO356_00315 0.22 -0.7 58,381 + AO356_00315 0.22 -0.3 58,381 + AO356_00315 0.22 -2.0 58,381 + AO356_00315 0.22 +0.8 58,382 - AO356_00315 0.22 +1.1 58,438 + AO356_00315 0.26 +0.5 58,438 + AO356_00315 0.26 -0.3 58,438 + AO356_00315 0.26 -1.3 58,438 + AO356_00315 0.26 -1.3 58,438 + AO356_00315 0.26 +0.4 58,461 + AO356_00315 0.28 -0.2 58,462 - AO356_00315 0.28 -0.9 58,462 - AO356_00315 0.28 -2.1 58,477 + AO356_00315 0.29 +0.6 58,506 + AO356_00315 0.31 -0.1 58,506 + AO356_00315 0.31 -0.6 58,506 + AO356_00315 0.31 -0.8 58,506 + AO356_00315 0.31 +0.8 58,506 + AO356_00315 0.31 +0.1 58,507 - AO356_00315 0.31 +0.5 58,507 - AO356_00315 0.31 +0.7 58,507 - AO356_00315 0.31 -0.5 58,507 - AO356_00315 0.31 -1.3 58,507 - AO356_00315 0.31 +0.3 58,507 - AO356_00315 0.31 -1.4 58,507 - AO356_00315 0.31 -1.4 58,507 - AO356_00315 0.31 +0.3 58,512 + AO356_00315 0.32 +0.3 58,693 - AO356_00315 0.46 +0.4 58,719 + AO356_00315 0.48 +0.5 58,773 + AO356_00315 0.52 -0.5 58,774 - AO356_00315 0.52 -0.0 58,847 + AO356_00315 0.58 -0.8 58,847 + AO356_00315 0.58 -0.4 58,886 - AO356_00315 0.61 -0.2 58,886 - AO356_00315 0.61 -1.1 58,931 + AO356_00315 0.64 +0.5 58,959 + AO356_00315 0.67 +0.2 58,959 + AO356_00315 0.67 -0.2 58,959 + AO356_00315 0.67 +0.4 58,960 - AO356_00315 0.67 +0.8
Or see this region's nucleotide sequence