Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2889 and DvMF_2890 are separated by 117 nucleotides DvMF_2890 and DvMF_2891 overlap by 11 nucleotides DvMF_2891 and DvMF_2892 are separated by 881 nucleotides
DvMF_2889: DvMF_2889 - aspartate aminotransferase (RefSeq), at 3,645,370 to 3,646,554
_2889
DvMF_2890: DvMF_2890 - hypothetical protein (RefSeq), at 3,646,672 to 3,646,905
_2890
DvMF_2891: DvMF_2891 - 5-enolpyruvylshikimate-3-phosphate synthase-like protein (RefSeq), at 3,646,895 to 3,648,772
_2891
DvMF_2892: DvMF_2892 - adenylylsulfate reductase, beta subunit (RefSeq), at 3,649,654 to 3,650,157
_2892
Position (kb)
3646
3647
3648
3649 Strain fitness (log2 ratio)
-1
0
1
2 at 3646.171 kb on + strand, within DvMF_2889 at 3646.235 kb on + strand, within DvMF_2889 at 3646.283 kb on + strand, within DvMF_2889 at 3646.283 kb on + strand, within DvMF_2889 at 3646.465 kb on - strand at 3646.979 kb on + strand at 3647.063 kb on - strand at 3647.106 kb on - strand, within DvMF_2891 at 3647.242 kb on - strand, within DvMF_2891 at 3647.442 kb on - strand, within DvMF_2891 at 3647.545 kb on + strand, within DvMF_2891 at 3647.724 kb on + strand, within DvMF_2891 at 3647.744 kb on + strand, within DvMF_2891 at 3647.747 kb on - strand, within DvMF_2891 at 3647.897 kb on + strand, within DvMF_2891 at 3647.962 kb on - strand, within DvMF_2891 at 3648.298 kb on + strand, within DvMF_2891 at 3648.306 kb on - strand, within DvMF_2891 at 3648.507 kb on - strand, within DvMF_2891 at 3648.519 kb on + strand, within DvMF_2891 at 3648.646 kb on + strand at 3648.884 kb on - strand at 3648.887 kb on + strand at 3649.016 kb on + strand at 3649.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 3,646,171 + DvMF_2889 0.68 +0.0 3,646,235 + DvMF_2889 0.73 -0.1 3,646,283 + DvMF_2889 0.77 -0.8 3,646,283 + DvMF_2889 0.77 -1.1 3,646,465 - +0.1 3,646,979 + -0.4 3,647,063 - -1.3 3,647,106 - DvMF_2891 0.11 -0.8 3,647,242 - DvMF_2891 0.18 +2.2 3,647,442 - DvMF_2891 0.29 -0.2 3,647,545 + DvMF_2891 0.35 -0.2 3,647,724 + DvMF_2891 0.44 -1.1 3,647,744 + DvMF_2891 0.45 +0.4 3,647,747 - DvMF_2891 0.45 +0.3 3,647,897 + DvMF_2891 0.53 +1.9 3,647,962 - DvMF_2891 0.57 -0.2 3,648,298 + DvMF_2891 0.75 -0.9 3,648,306 - DvMF_2891 0.75 -0.2 3,648,507 - DvMF_2891 0.86 -1.3 3,648,519 + DvMF_2891 0.86 -0.0 3,648,646 + +0.3 3,648,884 - -0.9 3,648,887 + -0.3 3,649,016 + -0.8 3,649,361 - -0.6
Or see this region's nucleotide sequence