Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2762

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2760 and DvMF_2761 are separated by 262 nucleotidesDvMF_2761 and DvMF_2762 are separated by 209 nucleotidesDvMF_2762 and DvMF_2763 are separated by 460 nucleotides DvMF_2760: DvMF_2760 - hypothetical protein (RefSeq), at 3,490,625 to 3,491,650 _2760 DvMF_2761: DvMF_2761 - hypothetical protein (RefSeq), at 3,491,913 to 3,492,314 _2761 DvMF_2762: DvMF_2762 - diguanylate cyclase with hemerythrin-like metal-binding domain (RefSeq), at 3,492,524 to 3,494,419 _2762 DvMF_2763: DvMF_2763 - ABC-type tungstate transport system, permease component (RefSeq), at 3,494,880 to 3,495,704 _2763 Position (kb) 3492 3493 3494 3495Strain fitness (log2 ratio) -1 0 1at 3491.591 kb on - strandat 3491.683 kb on - strandat 3491.903 kb on + strandat 3491.970 kb on + strand, within DvMF_2761at 3492.574 kb on - strandat 3492.665 kb on - strandat 3492.935 kb on + strand, within DvMF_2762at 3493.066 kb on + strand, within DvMF_2762at 3493.074 kb on - strand, within DvMF_2762at 3493.160 kb on + strand, within DvMF_2762at 3493.359 kb on + strand, within DvMF_2762at 3493.458 kb on + strand, within DvMF_2762at 3493.565 kb on + strand, within DvMF_2762at 3493.575 kb on + strand, within DvMF_2762at 3493.669 kb on - strand, within DvMF_2762at 3493.823 kb on - strand, within DvMF_2762at 3493.874 kb on - strand, within DvMF_2762at 3493.908 kb on + strand, within DvMF_2762at 3493.916 kb on - strand, within DvMF_2762at 3493.916 kb on - strand, within DvMF_2762at 3493.916 kb on - strand, within DvMF_2762at 3494.144 kb on - strand, within DvMF_2762at 3494.265 kb on - strandat 3494.286 kb on - strandat 3494.429 kb on - strandat 3494.472 kb on + strandat 3494.472 kb on + strandat 3494.480 kb on - strandat 3494.664 kb on + strandat 3494.665 kb on - strandat 3494.957 kb on - strandat 3494.957 kb on - strandat 3495.097 kb on - strand, within DvMF_2763at 3495.107 kb on - strand, within DvMF_2763at 3495.216 kb on - strand, within DvMF_2763at 3495.320 kb on + strand, within DvMF_2763

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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3,491,591 - -0.1
3,491,683 - -0.4
3,491,903 + -0.5
3,491,970 + DvMF_2761 0.14 -0.6
3,492,574 - -0.3
3,492,665 - +0.7
3,492,935 + DvMF_2762 0.22 -0.4
3,493,066 + DvMF_2762 0.29 -0.7
3,493,074 - DvMF_2762 0.29 -0.4
3,493,160 + DvMF_2762 0.34 +0.2
3,493,359 + DvMF_2762 0.44 -0.0
3,493,458 + DvMF_2762 0.49 +0.7
3,493,565 + DvMF_2762 0.55 -0.5
3,493,575 + DvMF_2762 0.55 +0.3
3,493,669 - DvMF_2762 0.60 -0.7
3,493,823 - DvMF_2762 0.69 +0.4
3,493,874 - DvMF_2762 0.71 +0.4
3,493,908 + DvMF_2762 0.73 +0.8
3,493,916 - DvMF_2762 0.73 -0.8
3,493,916 - DvMF_2762 0.73 -0.4
3,493,916 - DvMF_2762 0.73 -0.5
3,494,144 - DvMF_2762 0.85 -0.6
3,494,265 - -0.8
3,494,286 - -0.1
3,494,429 - -0.9
3,494,472 + -0.8
3,494,472 + -1.0
3,494,480 - -1.1
3,494,664 + -0.4
3,494,665 - +0.3
3,494,957 - -0.7
3,494,957 - -0.2
3,495,097 - DvMF_2763 0.26 +0.7
3,495,107 - DvMF_2763 0.28 +0.9
3,495,216 - DvMF_2763 0.41 -1.0
3,495,320 + DvMF_2763 0.53 +0.3

Or see this region's nucleotide sequence