Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2530

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2529 and DvMF_2530 are separated by 424 nucleotidesDvMF_2530 and DvMF_2531 are separated by 3 nucleotides DvMF_2529: DvMF_2529 - MscS Mechanosensitive ion channel (RefSeq), at 3,188,885 to 3,191,479 _2529 DvMF_2530: DvMF_2530 - hypothetical protein (RefSeq), at 3,191,904 to 3,193,049 _2530 DvMF_2531: DvMF_2531 - cytochrome bd-type quinol oxidase subunit 1-like protein (RefSeq), at 3,193,053 to 3,194,360 _2531 Position (kb) 3191 3192 3193 3194Strain fitness (log2 ratio) -1 0 1at 3190.913 kb on - strand, within DvMF_2529at 3190.922 kb on - strand, within DvMF_2529at 3191.233 kb on - strandat 3191.438 kb on - strandat 3191.501 kb on - strandat 3191.755 kb on - strandat 3191.810 kb on - strandat 3191.887 kb on + strandat 3191.955 kb on - strandat 3191.980 kb on - strandat 3191.995 kb on + strandat 3192.178 kb on + strand, within DvMF_2530at 3192.300 kb on - strand, within DvMF_2530at 3192.574 kb on + strand, within DvMF_2530at 3192.721 kb on + strand, within DvMF_2530at 3192.776 kb on - strand, within DvMF_2530at 3192.776 kb on - strand, within DvMF_2530at 3192.776 kb on - strand, within DvMF_2530at 3192.955 kb on + strandat 3193.043 kb on + strandat 3193.044 kb on + strandat 3193.058 kb on + strandat 3193.312 kb on - strand, within DvMF_2531at 3193.492 kb on - strand, within DvMF_2531at 3193.533 kb on - strand, within DvMF_2531at 3193.801 kb on - strand, within DvMF_2531at 3193.803 kb on - strand, within DvMF_2531at 3193.828 kb on - strand, within DvMF_2531at 3193.841 kb on - strand, within DvMF_2531at 3193.915 kb on - strand, within DvMF_2531at 3193.955 kb on + strand, within DvMF_2531

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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3,190,913 - DvMF_2529 0.78 -1.1
3,190,922 - DvMF_2529 0.78 -1.3
3,191,233 - -0.4
3,191,438 - -1.2
3,191,501 - -0.1
3,191,755 - -0.3
3,191,810 - -0.2
3,191,887 + -0.2
3,191,955 - -0.9
3,191,980 - +0.2
3,191,995 + -0.0
3,192,178 + DvMF_2530 0.24 -1.2
3,192,300 - DvMF_2530 0.35 -0.7
3,192,574 + DvMF_2530 0.58 -0.3
3,192,721 + DvMF_2530 0.71 -0.3
3,192,776 - DvMF_2530 0.76 -1.5
3,192,776 - DvMF_2530 0.76 -1.4
3,192,776 - DvMF_2530 0.76 -0.3
3,192,955 + -0.7
3,193,043 + +0.7
3,193,044 + -0.5
3,193,058 + -1.0
3,193,312 - DvMF_2531 0.20 -0.4
3,193,492 - DvMF_2531 0.34 -0.2
3,193,533 - DvMF_2531 0.37 -0.9
3,193,801 - DvMF_2531 0.57 -0.7
3,193,803 - DvMF_2531 0.57 -0.8
3,193,828 - DvMF_2531 0.59 +1.3
3,193,841 - DvMF_2531 0.60 +0.3
3,193,915 - DvMF_2531 0.66 -1.0
3,193,955 + DvMF_2531 0.69 -0.8

Or see this region's nucleotide sequence