Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1981

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1980 and DvMF_1981 are separated by 510 nucleotidesDvMF_1981 and DvMF_1982 are separated by 397 nucleotides DvMF_1980: DvMF_1980 - hypothetical protein (RefSeq), at 2,449,371 to 2,449,688 _1980 DvMF_1981: DvMF_1981 - Ferritin Dps family protein (RefSeq), at 2,450,199 to 2,450,798 _1981 DvMF_1982: DvMF_1982 - multi-sensor hybrid histidine kinase (RefSeq), at 2,451,196 to 2,454,372 _1982 Position (kb) 2450 2451Strain fitness (log2 ratio) -1 0 1at 2449.202 kb on - strandat 2449.204 kb on + strandat 2449.610 kb on + strand, within DvMF_1980at 2449.710 kb on - strandat 2449.909 kb on + strandat 2449.983 kb on + strandat 2450.266 kb on - strand, within DvMF_1981at 2450.454 kb on - strand, within DvMF_1981at 2450.506 kb on + strand, within DvMF_1981at 2450.702 kb on - strand, within DvMF_1981at 2450.819 kb on + strandat 2450.819 kb on + strandat 2450.819 kb on + strandat 2450.892 kb on + strandat 2450.957 kb on - strandat 2451.183 kb on - strandat 2451.183 kb on - strandat 2451.270 kb on + strandat 2451.288 kb on - strandat 2451.417 kb on - strandat 2451.488 kb on - strandat 2451.607 kb on - strand, within DvMF_1982at 2451.664 kb on - strand, within DvMF_1982at 2451.729 kb on - strand, within DvMF_1982at 2451.747 kb on - strand, within DvMF_1982

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,449,202 - -1.0
2,449,204 + -0.6
2,449,610 + DvMF_1980 0.75 +0.1
2,449,710 - +0.6
2,449,909 + -0.2
2,449,983 + -0.9
2,450,266 - DvMF_1981 0.11 -0.6
2,450,454 - DvMF_1981 0.42 -1.3
2,450,506 + DvMF_1981 0.51 -1.6
2,450,702 - DvMF_1981 0.84 -1.1
2,450,819 + -0.8
2,450,819 + -0.7
2,450,819 + -0.8
2,450,892 + -0.5
2,450,957 - -1.1
2,451,183 - -0.8
2,451,183 - -0.7
2,451,270 + -0.7
2,451,288 - -0.6
2,451,417 - -0.5
2,451,488 - +0.2
2,451,607 - DvMF_1982 0.13 -1.5
2,451,664 - DvMF_1982 0.15 +1.5
2,451,729 - DvMF_1982 0.17 -0.6
2,451,747 - DvMF_1982 0.17 -0.6

Or see this region's nucleotide sequence