Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1820

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1819 and DvMF_1820 are separated by 482 nucleotidesDvMF_1820 and DvMF_1821 are separated by 87 nucleotidesDvMF_1821 and DvMF_1822 are separated by 199 nucleotides DvMF_1819: DvMF_1819 - anaerobic ribonucleoside triphosphate reductase (RefSeq), at 2,219,503 to 2,221,413 _1819 DvMF_1820: DvMF_1820 - hypothetical protein (RefSeq), at 2,221,896 to 2,223,434 _1820 DvMF_1821: DvMF_1821 - Tir chaperone family protein (RefSeq), at 2,223,522 to 2,224,004 _1821 DvMF_1822: DvMF_1822 - aminotransferase class I and II (RefSeq), at 2,224,204 to 2,225,421 _1822 Position (kb) 2221 2222 2223 2224Strain fitness (log2 ratio) -2 -1 0 1at 2220.931 kb on + strand, within DvMF_1819at 2220.939 kb on - strand, within DvMF_1819at 2220.969 kb on + strand, within DvMF_1819at 2220.977 kb on - strand, within DvMF_1819at 2221.034 kb on - strand, within DvMF_1819at 2221.263 kb on - strandat 2221.635 kb on + strandat 2222.010 kb on - strandat 2222.208 kb on - strand, within DvMF_1820at 2222.441 kb on + strand, within DvMF_1820at 2222.518 kb on + strand, within DvMF_1820at 2222.553 kb on + strand, within DvMF_1820at 2222.602 kb on + strand, within DvMF_1820at 2222.718 kb on + strand, within DvMF_1820at 2222.795 kb on + strand, within DvMF_1820at 2222.808 kb on - strand, within DvMF_1820at 2222.914 kb on + strand, within DvMF_1820at 2222.921 kb on + strand, within DvMF_1820at 2222.949 kb on - strand, within DvMF_1820at 2223.220 kb on + strand, within DvMF_1820at 2223.277 kb on + strand, within DvMF_1820at 2223.472 kb on + strandat 2223.480 kb on - strandat 2223.480 kb on - strandat 2223.655 kb on + strand, within DvMF_1821at 2223.900 kb on + strand, within DvMF_1821at 2224.072 kb on + strandat 2224.415 kb on - strand, within DvMF_1822

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,220,931 + DvMF_1819 0.75 -0.9
2,220,939 - DvMF_1819 0.75 -0.9
2,220,969 + DvMF_1819 0.77 -0.8
2,220,977 - DvMF_1819 0.77 -0.8
2,221,034 - DvMF_1819 0.80 +0.2
2,221,263 - -0.8
2,221,635 + -0.7
2,222,010 - +0.1
2,222,208 - DvMF_1820 0.20 -1.1
2,222,441 + DvMF_1820 0.35 -0.4
2,222,518 + DvMF_1820 0.40 -0.9
2,222,553 + DvMF_1820 0.43 -1.2
2,222,602 + DvMF_1820 0.46 -0.5
2,222,718 + DvMF_1820 0.53 -0.9
2,222,795 + DvMF_1820 0.58 +0.5
2,222,808 - DvMF_1820 0.59 -0.4
2,222,914 + DvMF_1820 0.66 -0.0
2,222,921 + DvMF_1820 0.67 -1.0
2,222,949 - DvMF_1820 0.68 -0.4
2,223,220 + DvMF_1820 0.86 -0.9
2,223,277 + DvMF_1820 0.90 -0.2
2,223,472 + -0.6
2,223,480 - -1.4
2,223,480 - -0.8
2,223,655 + DvMF_1821 0.28 -0.4
2,223,900 + DvMF_1821 0.78 -1.8
2,224,072 + -0.3
2,224,415 - DvMF_1822 0.17 -0.7

Or see this region's nucleotide sequence