Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1135 and DvMF_1136 overlap by 4 nucleotides DvMF_1136 and DvMF_1137 are separated by 226 nucleotides DvMF_1137 and DvMF_1138 are separated by 5 nucleotides
DvMF_1135: DvMF_1135 - metal dependent phosphohydrolase (RefSeq), at 1,393,458 to 1,394,480
_1135
DvMF_1136: DvMF_1136 - Tetratricopeptide domain protein (RefSeq), at 1,394,477 to 1,395,385
_1136
DvMF_1137: DvMF_1137 - orotidine 5'-phosphate decarboxylase (RefSeq), at 1,395,612 to 1,396,364
_1137
DvMF_1138: DvMF_1138 - Guanylate kinase (RefSeq), at 1,396,370 to 1,396,999
_1138
Position (kb)
1394
1395
1396 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1393.571 kb on - strand, within DvMF_1135 at 1393.636 kb on + strand, within DvMF_1135 at 1394.149 kb on - strand, within DvMF_1135 at 1394.219 kb on - strand, within DvMF_1135 at 1394.305 kb on - strand, within DvMF_1135 at 1394.328 kb on + strand, within DvMF_1135 at 1394.439 kb on + strand at 1394.439 kb on + strand at 1394.537 kb on + strand at 1394.537 kb on + strand at 1394.545 kb on - strand at 1394.545 kb on - strand at 1394.581 kb on + strand, within DvMF_1136 at 1394.748 kb on - strand, within DvMF_1136 at 1394.949 kb on - strand, within DvMF_1136 at 1395.025 kb on + strand, within DvMF_1136 at 1395.214 kb on - strand, within DvMF_1136 at 1395.552 kb on + strand at 1395.689 kb on - strand, within DvMF_1137 at 1395.777 kb on + strand, within DvMF_1137 at 1395.846 kb on + strand, within DvMF_1137 at 1396.012 kb on - strand, within DvMF_1137 at 1396.012 kb on - strand, within DvMF_1137 at 1396.216 kb on - strand, within DvMF_1137
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,393,571 - DvMF_1135 0.11 -0.9 1,393,636 + DvMF_1135 0.17 +0.5 1,394,149 - DvMF_1135 0.68 -0.8 1,394,219 - DvMF_1135 0.74 -0.6 1,394,305 - DvMF_1135 0.83 -1.0 1,394,328 + DvMF_1135 0.85 +0.4 1,394,439 + -0.3 1,394,439 + +1.3 1,394,537 + +0.1 1,394,537 + -1.0 1,394,545 - +0.2 1,394,545 - -0.1 1,394,581 + DvMF_1136 0.11 -0.6 1,394,748 - DvMF_1136 0.30 +0.0 1,394,949 - DvMF_1136 0.52 -0.1 1,395,025 + DvMF_1136 0.60 +0.4 1,395,214 - DvMF_1136 0.81 +0.9 1,395,552 + -0.6 1,395,689 - DvMF_1137 0.10 -3.6 1,395,777 + DvMF_1137 0.22 -0.2 1,395,846 + DvMF_1137 0.31 -0.9 1,396,012 - DvMF_1137 0.53 -3.1 1,396,012 - DvMF_1137 0.53 -2.5 1,396,216 - DvMF_1137 0.80 -3.2
Or see this region's nucleotide sequence