Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1041

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1040 and DvMF_1041 are separated by 213 nucleotidesDvMF_1041 and DvMF_1042 are separated by 20 nucleotides DvMF_1040: DvMF_1040 - PhoH family protein (RefSeq), at 1,263,736 to 1,265,313 _1040 DvMF_1041: DvMF_1041 - monofunctional biosynthetic peptidoglycan transglycosylase (RefSeq), at 1,265,527 to 1,266,822 _1041 DvMF_1042: DvMF_1042 - hypothetical protein (RefSeq), at 1,266,843 to 1,267,562 _1042 Position (kb) 1265 1266 1267Strain fitness (log2 ratio) -2 -1 0 1at 1264.586 kb on - strand, within DvMF_1040at 1264.748 kb on - strand, within DvMF_1040at 1264.749 kb on - strand, within DvMF_1040at 1264.756 kb on + strand, within DvMF_1040at 1264.981 kb on - strand, within DvMF_1040at 1265.003 kb on - strand, within DvMF_1040at 1265.052 kb on - strand, within DvMF_1040at 1265.114 kb on + strand, within DvMF_1040at 1265.173 kb on + strandat 1265.181 kb on - strandat 1265.181 kb on - strandat 1265.608 kb on - strandat 1265.633 kb on + strandat 1266.270 kb on + strand, within DvMF_1041at 1266.308 kb on + strand, within DvMF_1041at 1266.688 kb on - strand, within DvMF_1041at 1266.763 kb on + strandat 1266.769 kb on - strandat 1266.936 kb on - strand, within DvMF_1042at 1267.327 kb on - strand, within DvMF_1042at 1267.530 kb on - strandat 1267.578 kb on - strandat 1267.698 kb on - strandat 1267.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,264,586 - DvMF_1040 0.54 -0.6
1,264,748 - DvMF_1040 0.64 -1.3
1,264,749 - DvMF_1040 0.64 +0.2
1,264,756 + DvMF_1040 0.65 -1.2
1,264,981 - DvMF_1040 0.79 +0.1
1,265,003 - DvMF_1040 0.80 -0.7
1,265,052 - DvMF_1040 0.83 -0.4
1,265,114 + DvMF_1040 0.87 +0.1
1,265,173 + -0.3
1,265,181 - -1.1
1,265,181 - -0.7
1,265,608 - -0.1
1,265,633 + -1.0
1,266,270 + DvMF_1041 0.57 -0.4
1,266,308 + DvMF_1041 0.60 -0.4
1,266,688 - DvMF_1041 0.90 -0.7
1,266,763 + -0.7
1,266,769 - -1.2
1,266,936 - DvMF_1042 0.13 -0.6
1,267,327 - DvMF_1042 0.67 -0.1
1,267,530 - -2.0
1,267,578 - -0.6
1,267,698 - -2.2
1,267,698 - -0.1

Or see this region's nucleotide sequence