Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1025 and DvMF_1026 are separated by 4 nucleotides DvMF_1026 and DvMF_1027 are separated by 26 nucleotides DvMF_1027 and DvMF_1028 are separated by 58 nucleotides
DvMF_1025: DvMF_1025 - hypothetical protein (RefSeq), at 1,244,708 to 1,245,256
_1025
DvMF_1026: DvMF_1026 - hypothetical protein (RefSeq), at 1,245,261 to 1,245,866
_1026
DvMF_1027: DvMF_1027 - type II and III secretion system protein (RefSeq), at 1,245,893 to 1,247,551
_1027
DvMF_1028: DvMF_1028 - type II secretion system protein E (RefSeq), at 1,247,610 to 1,249,316
_1028
Position (kb)
1245
1246
1247
1248 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1244.947 kb on - strand, within DvMF_1025 at 1245.165 kb on - strand, within DvMF_1025 at 1245.500 kb on - strand, within DvMF_1026 at 1245.677 kb on + strand, within DvMF_1026 at 1245.695 kb on - strand, within DvMF_1026 at 1245.721 kb on + strand, within DvMF_1026 at 1245.738 kb on - strand, within DvMF_1026 at 1245.802 kb on - strand, within DvMF_1026 at 1245.917 kb on + strand at 1245.925 kb on - strand at 1245.975 kb on - strand at 1246.133 kb on + strand, within DvMF_1027 at 1246.165 kb on + strand, within DvMF_1027 at 1246.301 kb on + strand, within DvMF_1027 at 1246.448 kb on + strand, within DvMF_1027 at 1247.199 kb on + strand, within DvMF_1027 at 1247.259 kb on - strand, within DvMF_1027 at 1247.267 kb on - strand, within DvMF_1027 at 1247.446 kb on - strand at 1247.451 kb on - strand at 1247.542 kb on - strand at 1247.606 kb on - strand at 1247.655 kb on - strand at 1247.680 kb on - strand at 1247.721 kb on - strand at 1247.738 kb on - strand at 1247.822 kb on - strand, within DvMF_1028 at 1247.824 kb on + strand, within DvMF_1028 at 1247.859 kb on + strand, within DvMF_1028 at 1247.889 kb on + strand, within DvMF_1028 at 1248.017 kb on + strand, within DvMF_1028 at 1248.227 kb on + strand, within DvMF_1028 at 1248.349 kb on + strand, within DvMF_1028 at 1248.502 kb on + strand, within DvMF_1028
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,244,947 - DvMF_1025 0.44 +0.0 1,245,165 - DvMF_1025 0.83 -0.2 1,245,500 - DvMF_1026 0.39 -0.3 1,245,677 + DvMF_1026 0.69 +0.5 1,245,695 - DvMF_1026 0.72 -0.3 1,245,721 + DvMF_1026 0.76 -0.3 1,245,738 - DvMF_1026 0.79 -0.8 1,245,802 - DvMF_1026 0.89 -0.5 1,245,917 + -0.6 1,245,925 - +1.9 1,245,975 - -0.1 1,246,133 + DvMF_1027 0.14 -0.4 1,246,165 + DvMF_1027 0.16 +0.5 1,246,301 + DvMF_1027 0.25 +0.0 1,246,448 + DvMF_1027 0.33 -0.2 1,247,199 + DvMF_1027 0.79 -0.1 1,247,259 - DvMF_1027 0.82 +1.1 1,247,267 - DvMF_1027 0.83 +0.4 1,247,446 - -0.3 1,247,451 - -3.1 1,247,542 - -0.7 1,247,606 - -0.3 1,247,655 - -0.3 1,247,680 - +1.1 1,247,721 - +0.8 1,247,738 - +0.2 1,247,822 - DvMF_1028 0.12 -0.4 1,247,824 + DvMF_1028 0.13 -1.1 1,247,859 + DvMF_1028 0.15 -0.6 1,247,889 + DvMF_1028 0.16 -0.9 1,248,017 + DvMF_1028 0.24 +0.1 1,248,227 + DvMF_1028 0.36 -0.6 1,248,349 + DvMF_1028 0.43 +0.0 1,248,502 + DvMF_1028 0.52 -0.5
Or see this region's nucleotide sequence