Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1022

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1021 and DvMF_1022 are separated by 151 nucleotidesDvMF_1022 and DvMF_R0029 are separated by 230 nucleotidesDvMF_R0029 and DvMF_1023 are separated by 247 nucleotides DvMF_1021: DvMF_1021 - two component transcriptional regulator, LuxR family (RefSeq), at 1,237,817 to 1,238,467 _1021 DvMF_1022: DvMF_1022 - hypothetical protein (RefSeq), at 1,238,619 to 1,239,476 _1022 DvMF_R0029: DvMF_R0029 - tRNA-Leu (RefSeq), at 1,239,707 to 1,239,793 _R0029 DvMF_1023: DvMF_1023 - transcriptional regulator, LuxR family (RefSeq), at 1,240,041 to 1,242,095 _1023 Position (kb) 1238 1239 1240Strain fitness (log2 ratio) -1 0 1at 1237.680 kb on - strandat 1237.866 kb on + strandat 1237.875 kb on - strandat 1238.352 kb on - strand, within DvMF_1021at 1238.364 kb on - strand, within DvMF_1021at 1238.423 kb on - strandat 1238.838 kb on + strand, within DvMF_1022at 1238.909 kb on + strand, within DvMF_1022at 1238.909 kb on + strand, within DvMF_1022at 1238.917 kb on - strand, within DvMF_1022at 1239.266 kb on + strand, within DvMF_1022at 1239.295 kb on + strand, within DvMF_1022at 1239.887 kb on - strandat 1239.923 kb on + strandat 1240.447 kb on + strand, within DvMF_1023

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,237,680 - -0.1
1,237,866 + +0.0
1,237,875 - +1.7
1,238,352 - DvMF_1021 0.82 +0.2
1,238,364 - DvMF_1021 0.84 -0.3
1,238,423 - +0.3
1,238,838 + DvMF_1022 0.26 -0.1
1,238,909 + DvMF_1022 0.34 +0.5
1,238,909 + DvMF_1022 0.34 +0.8
1,238,917 - DvMF_1022 0.35 +0.5
1,239,266 + DvMF_1022 0.75 +0.2
1,239,295 + DvMF_1022 0.79 +0.4
1,239,887 - -0.9
1,239,923 + -0.4
1,240,447 + DvMF_1023 0.20 -0.8

Or see this region's nucleotide sequence