Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0524

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0523 and DvMF_0524 are separated by 444 nucleotidesDvMF_0524 and DvMF_0525 are separated by 1 nucleotides DvMF_0523: DvMF_0523 - magnesium transporter (RefSeq), at 616,522 to 617,925 _0523 DvMF_0524: DvMF_0524 - nicotinate-nucleotide pyrophosphorylase (RefSeq), at 618,370 to 619,278 _0524 DvMF_0525: DvMF_0525 - quinolinate synthetase (RefSeq), at 619,280 to 620,329 _0525 Position (kb) 618 619 620Strain fitness (log2 ratio) -1 0 1at 617.460 kb on - strand, within DvMF_0523at 617.725 kb on - strand, within DvMF_0523at 617.901 kb on - strandat 617.921 kb on + strandat 618.057 kb on + strandat 618.270 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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617,460 - DvMF_0523 0.67 -1.6
617,725 - DvMF_0523 0.86 -0.7
617,901 - -0.8
617,921 + -0.9
618,057 + -0.8
618,270 + -0.8

Or see this region's nucleotide sequence