Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0333 and DvMF_R0016 are separated by 252 nucleotides DvMF_R0016 and DvMF_0334 are separated by 313 nucleotides DvMF_0334 and DvMF_0335 are separated by 339 nucleotides DvMF_0335 and DvMF_0336 are separated by 165 nucleotides
DvMF_0333: DvMF_0333 - ADP-ribosylation/Crystallin J1 (RefSeq), at 388,796 to 389,899
_0333
DvMF_R0016: DvMF_R0016 - tRNA-Arg (RefSeq), at 390,152 to 390,228
_R0016
DvMF_0334: DvMF_0334 - Glutamate--tRNA ligase (RefSeq), at 390,542 to 391,663
_0334
DvMF_0335: DvMF_0335 - hypothetical protein (RefSeq), at 392,003 to 392,395
_0335
DvMF_0336: DvMF_0336 - transcriptional regulator, TetR family (RefSeq), at 392,561 to 393,136
_0336
Position (kb) 390
391
392 Strain fitness (log2 ratio) -2
-1
0
1 at 389.595 kb on - strand, within DvMF_0333 at 389.701 kb on + strand, within DvMF_0333 at 389.751 kb on + strand, within DvMF_0333 at 389.796 kb on + strand at 389.804 kb on - strand at 389.823 kb on - strand at 389.892 kb on - strand at 390.034 kb on - strand at 390.053 kb on - strand at 390.735 kb on + strand, within DvMF_0334 at 390.793 kb on + strand, within DvMF_0334 at 390.825 kb on - strand, within DvMF_0334 at 390.971 kb on + strand, within DvMF_0334 at 391.006 kb on - strand, within DvMF_0334 at 391.006 kb on - strand, within DvMF_0334 at 391.414 kb on - strand, within DvMF_0334 at 391.565 kb on - strand at 391.728 kb on + strand at 391.845 kb on + strand at 391.880 kb on - strand at 392.105 kb on + strand, within DvMF_0335 at 392.261 kb on + strand, within DvMF_0335 at 392.294 kb on + strand, within DvMF_0335
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 389,595 - DvMF_0333 0.72 -0.3 389,701 + DvMF_0333 0.82 -0.2 389,751 + DvMF_0333 0.87 -1.0 389,796 + -0.7 389,804 - -0.2 389,823 - -0.5 389,892 - -0.5 390,034 - -1.3 390,053 - -0.0 390,735 + DvMF_0334 0.17 -0.9 390,793 + DvMF_0334 0.22 -0.7 390,825 - DvMF_0334 0.25 -1.3 390,971 + DvMF_0334 0.38 -1.0 391,006 - DvMF_0334 0.41 -0.8 391,006 - DvMF_0334 0.41 -0.3 391,414 - DvMF_0334 0.78 -2.1 391,565 - -1.3 391,728 + -0.2 391,845 + -0.7 391,880 - -0.9 392,105 + DvMF_0335 0.26 -1.1 392,261 + DvMF_0335 0.66 -0.5 392,294 + DvMF_0335 0.74 -0.9
Or see this region's nucleotide sequence