Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2379

Experiment: BHIS with Dimethyl Sulfoxide 9 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2378 and BT2379 are separated by 284 nucleotides BT2378: BT2378 - endo-polygalacturonase (NCBI ptt file), at 2,965,174 to 2,966,622 BT2378 BT2379: BT2379 - hypothetical protein (NCBI ptt file), at 2,966,907 to 2,967,641 BT2379 Position (kb) 2966 2967 2968Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2965.930 kb on - strand, within BT2378at 2965.973 kb on - strand, within BT2378at 2966.021 kb on - strand, within BT2378at 2966.023 kb on - strand, within BT2378at 2966.086 kb on - strand, within BT2378at 2966.091 kb on + strand, within BT2378at 2966.092 kb on - strand, within BT2378at 2966.121 kb on - strand, within BT2378at 2966.188 kb on - strand, within BT2378at 2966.227 kb on - strand, within BT2378at 2966.306 kb on - strand, within BT2378at 2966.310 kb on + strandat 2966.338 kb on - strand, within BT2378at 2966.338 kb on - strand, within BT2378at 2966.362 kb on + strand, within BT2378at 2966.375 kb on - strand, within BT2378at 2966.396 kb on + strand, within BT2378at 2966.421 kb on + strand, within BT2378at 2966.442 kb on + strand, within BT2378at 2966.451 kb on + strand, within BT2378at 2966.546 kb on + strandat 2966.546 kb on + strandat 2966.546 kb on + strandat 2966.578 kb on - strandat 2966.657 kb on + strandat 2966.658 kb on - strandat 2966.765 kb on - strandat 2966.767 kb on + strandat 2966.774 kb on + strandat 2966.848 kb on + strandat 2966.848 kb on + strandat 2966.899 kb on + strandat 2966.900 kb on - strandat 2966.933 kb on + strandat 2966.934 kb on - strandat 2966.935 kb on + strandat 2966.936 kb on - strandat 2966.981 kb on + strand, within BT2379at 2966.988 kb on - strand, within BT2379at 2966.993 kb on + strand, within BT2379at 2966.993 kb on + strand, within BT2379at 2966.994 kb on - strand, within BT2379at 2967.052 kb on - strand, within BT2379at 2967.052 kb on - strand, within BT2379at 2967.052 kb on - strand, within BT2379at 2967.052 kb on - strand, within BT2379at 2967.074 kb on - strand, within BT2379at 2967.092 kb on + strand, within BT2379at 2967.094 kb on + strand, within BT2379at 2967.132 kb on - strand, within BT2379at 2967.143 kb on + strand, within BT2379at 2967.144 kb on - strand, within BT2379at 2967.155 kb on + strand, within BT2379at 2967.156 kb on - strand, within BT2379at 2967.172 kb on + strand, within BT2379at 2967.176 kb on + strand, within BT2379at 2967.176 kb on + strand, within BT2379at 2967.177 kb on - strand, within BT2379at 2967.197 kb on + strand, within BT2379at 2967.287 kb on + strand, within BT2379at 2967.318 kb on - strand, within BT2379at 2967.378 kb on + strand, within BT2379at 2967.430 kb on + strand, within BT2379at 2967.456 kb on - strand, within BT2379at 2967.456 kb on - strand, within BT2379at 2967.480 kb on + strand, within BT2379at 2967.481 kb on - strand, within BT2379at 2967.485 kb on + strand, within BT2379at 2967.570 kb on - strandat 2967.570 kb on - strandat 2967.604 kb on - strandat 2967.618 kb on + strandat 2967.631 kb on - strandat 2967.641 kb on + strandat 2967.661 kb on - strandat 2967.706 kb on + strandat 2967.707 kb on - strandat 2967.707 kb on - strandat 2967.737 kb on - strandat 2967.740 kb on + strandat 2967.741 kb on - strandat 2967.803 kb on + strandat 2967.803 kb on + strandat 2967.807 kb on + strandat 2967.808 kb on - strandat 2967.883 kb on - strandat 2967.896 kb on + strandat 2967.896 kb on + strandat 2967.898 kb on + strandat 2967.898 kb on + strandat 2967.898 kb on + strandat 2967.898 kb on + strandat 2967.905 kb on - strandat 2967.935 kb on - strandat 2967.968 kb on + strandat 2968.086 kb on + strandat 2968.116 kb on - strandat 2968.155 kb on - strandat 2968.224 kb on - strandat 2968.224 kb on - strandat 2968.261 kb on - strandat 2968.273 kb on + strandat 2968.274 kb on - strandat 2968.388 kb on - strandat 2968.391 kb on - strandat 2968.394 kb on - strandat 2968.394 kb on - strandat 2968.394 kb on - strandat 2968.436 kb on - strandat 2968.455 kb on + strandat 2968.455 kb on + strandat 2968.456 kb on - strandat 2968.507 kb on - strandat 2968.526 kb on - strandat 2968.538 kb on - strandat 2968.541 kb on + strandat 2968.542 kb on - strandat 2968.587 kb on - strandat 2968.587 kb on - strandat 2968.627 kb on + strandat 2968.632 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Dimethyl Sulfoxide 9 vol%
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2,965,930 - BT2378 0.52 -3.4
2,965,973 - BT2378 0.55 +1.4
2,966,021 - BT2378 0.58 -1.1
2,966,023 - BT2378 0.59 -1.1
2,966,086 - BT2378 0.63 +0.0
2,966,091 + BT2378 0.63 -1.6
2,966,092 - BT2378 0.63 +0.5
2,966,121 - BT2378 0.65 -2.0
2,966,188 - BT2378 0.70 -0.7
2,966,227 - BT2378 0.73 +0.2
2,966,306 - BT2378 0.78 -1.3
2,966,310 + +1.5
2,966,338 - BT2378 0.80 +1.2
2,966,338 - BT2378 0.80 +1.3
2,966,362 + BT2378 0.82 +0.7
2,966,375 - BT2378 0.83 -0.2
2,966,396 + BT2378 0.84 +2.7
2,966,421 + BT2378 0.86 -0.2
2,966,442 + BT2378 0.88 -0.1
2,966,451 + BT2378 0.88 -0.0
2,966,546 + -0.1
2,966,546 + -0.8
2,966,546 + -0.3
2,966,578 - -1.8
2,966,657 + -2.6
2,966,658 - -1.5
2,966,765 - +1.2
2,966,767 + -0.3
2,966,774 + -0.5
2,966,848 + +0.0
2,966,848 + -3.1
2,966,899 + -2.9
2,966,900 - +0.2
2,966,933 + +2.1
2,966,934 - -0.7
2,966,935 + +0.0
2,966,936 - +0.4
2,966,981 + BT2379 0.10 -1.9
2,966,988 - BT2379 0.11 -0.1
2,966,993 + BT2379 0.12 -1.2
2,966,993 + BT2379 0.12 +0.2
2,966,994 - BT2379 0.12 -0.6
2,967,052 - BT2379 0.20 +0.3
2,967,052 - BT2379 0.20 -0.9
2,967,052 - BT2379 0.20 +0.3
2,967,052 - BT2379 0.20 -0.8
2,967,074 - BT2379 0.23 +1.1
2,967,092 + BT2379 0.25 +1.1
2,967,094 + BT2379 0.25 -3.2
2,967,132 - BT2379 0.31 -0.1
2,967,143 + BT2379 0.32 -1.3
2,967,144 - BT2379 0.32 -4.1
2,967,155 + BT2379 0.34 -2.2
2,967,156 - BT2379 0.34 +1.5
2,967,172 + BT2379 0.36 -2.9
2,967,176 + BT2379 0.37 -2.1
2,967,176 + BT2379 0.37 +0.2
2,967,177 - BT2379 0.37 -2.6
2,967,197 + BT2379 0.39 -0.1
2,967,287 + BT2379 0.52 -0.8
2,967,318 - BT2379 0.56 -1.1
2,967,378 + BT2379 0.64 +0.9
2,967,430 + BT2379 0.71 -2.2
2,967,456 - BT2379 0.75 -1.5
2,967,456 - BT2379 0.75 +1.5
2,967,480 + BT2379 0.78 -0.9
2,967,481 - BT2379 0.78 -3.8
2,967,485 + BT2379 0.79 -0.8
2,967,570 - +0.1
2,967,570 - -0.6
2,967,604 - +0.3
2,967,618 + -2.6
2,967,631 - -3.4
2,967,641 + -0.5
2,967,661 - +1.6
2,967,706 + -0.3
2,967,707 - +1.5
2,967,707 - +0.5
2,967,737 - +0.4
2,967,740 + +1.5
2,967,741 - -0.5
2,967,803 + -4.0
2,967,803 + +0.5
2,967,807 + -2.4
2,967,808 - -2.6
2,967,883 - -1.4
2,967,896 + -1.5
2,967,896 + -1.3
2,967,898 + +2.5
2,967,898 + -0.1
2,967,898 + -2.5
2,967,898 + +0.3
2,967,905 - +0.8
2,967,935 - -1.1
2,967,968 + -0.2
2,968,086 + -0.9
2,968,116 - -0.9
2,968,155 - +1.1
2,968,224 - +0.8
2,968,224 - +1.5
2,968,261 - +2.3
2,968,273 + -0.1
2,968,274 - -1.1
2,968,388 - -1.2
2,968,391 - -3.5
2,968,394 - -1.8
2,968,394 - +2.0
2,968,394 - -2.5
2,968,436 - -1.6
2,968,455 + -0.4
2,968,455 + -2.2
2,968,456 - +0.2
2,968,507 - -0.8
2,968,526 - -0.2
2,968,538 - -0.1
2,968,541 + +0.1
2,968,542 - -1.3
2,968,587 - -3.8
2,968,587 - -0.1
2,968,627 + -0.1
2,968,632 + -1.1

Or see this region's nucleotide sequence