Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09880

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
1,019,117	+		PGA1_c09860	0.81	-0.8
1,019,131	-		PGA1_c09860	0.82	+1.5
1,019,134	-		PGA1_c09860	0.82	-0.3
1,019,153	-		PGA1_c09860	0.84	+1.3
1,019,155	-		PGA1_c09860	0.84	+2.7
1,019,229	+		PGA1_c09860	0.89	-0.5
1,019,229	+		PGA1_c09860	0.89	-2.0
1,019,237	+				-2.0
1,019,237	-				-2.4
1,019,237	-				-1.1
1,019,256	+				-1.3
1,019,287	+				-1.3
1,019,370	+				-1.3
1,019,376	-				-3.2
1,019,378	-				-1.3
1,019,391	+				+1.1
1,019,493	-				+1.0
1,019,600	-		PGA1_c09870	0.14	-0.5
1,019,636	-		PGA1_c09870	0.22	-0.4
1,019,696	+		PGA1_c09870	0.35	+1.3
1,019,696	+		PGA1_c09870	0.35	+0.2
1,019,766	-		PGA1_c09870	0.51	+0.1
1,019,766	-		PGA1_c09870	0.51	-1.8
1,019,851	+		PGA1_c09870	0.70	+1.3
1,019,859	-		PGA1_c09870	0.71	-1.1
1,019,871	+		PGA1_c09870	0.74	+1.2
1,019,892	-		PGA1_c09870	0.79	+0.5
1,020,116	-				+1.4
1,020,117	-				-1.7
1,020,191	+				+3.0
1,020,283	-				+0.2
1,020,283	-				-1.2
1,020,342	-				+1.5
1,020,526	+		PGA1_c09880	0.16	+1.8
1,020,571	-		PGA1_c09880	0.18	+0.7
1,020,668	-		PGA1_c09880	0.22	-0.1
1,020,704	+		PGA1_c09880	0.23	+2.1
1,020,742	-		PGA1_c09880	0.25	-1.6
1,020,787	+		PGA1_c09880	0.26	-0.4
1,020,828	+		PGA1_c09880	0.28	+2.0
1,020,836	-		PGA1_c09880	0.28	+1.2
1,020,900	+		PGA1_c09880	0.31	-0.2
1,021,021	-		PGA1_c09880	0.35	-2.2
1,021,159	+		PGA1_c09880	0.41	-0.2
1,021,167	-		PGA1_c09880	0.41	+1.9
1,021,201	+		PGA1_c09880	0.42	+0.6
1,021,214	-		PGA1_c09880	0.43	-2.1
1,021,224	-		PGA1_c09880	0.43	-1.5
1,021,305	+		PGA1_c09880	0.47	-1.0
1,021,360	-		PGA1_c09880	0.49	+0.4
1,021,391	-		PGA1_c09880	0.50	+0.5
1,021,416	+		PGA1_c09880	0.51	-0.5
1,021,416	+		PGA1_c09880	0.51	-0.4
1,021,426	+		PGA1_c09880	0.51	-2.8
1,021,426	+		PGA1_c09880	0.51	+1.1
1,021,436	+		PGA1_c09880	0.52	-0.8
1,021,436	+		PGA1_c09880	0.52	+0.9
1,021,441	+		PGA1_c09880	0.52	+0.5
1,021,441	+		PGA1_c09880	0.52	+0.3
1,021,449	-		PGA1_c09880	0.52	+1.4
1,021,449	-		PGA1_c09880	0.52	-1.1
1,021,508	+		PGA1_c09880	0.54	+2.3
1,021,556	+		PGA1_c09880	0.56	-3.4
1,021,556	-		PGA1_c09880	0.56	+1.3
1,021,564	-		PGA1_c09880	0.57	+0.1
1,021,564	-		PGA1_c09880	0.57	-0.6
1,021,613	+		PGA1_c09880	0.59	+0.0
1,021,704	-		PGA1_c09880	0.62	+0.7
1,021,740	+		PGA1_c09880	0.63	+1.0
1,021,808	+		PGA1_c09880	0.66	+0.3
1,021,816	-		PGA1_c09880	0.66	-1.5
1,021,833	+		PGA1_c09880	0.67	+1.8
1,021,841	-		PGA1_c09880	0.67	+0.7
1,021,855	-		PGA1_c09880	0.68	+0.4
1,021,968	-		PGA1_c09880	0.72	+1.5
1,022,001	-		PGA1_c09880	0.74	+0.2
1,022,050	-		PGA1_c09880	0.76	-0.8
1,022,101	-		PGA1_c09880	0.78	-1.0
1,022,139	+		PGA1_c09880	0.79	-0.6
1,022,165	+		PGA1_c09880	0.80	-0.4
1,022,242	+		PGA1_c09880	0.83	+1.0
1,022,253	+		PGA1_c09880	0.83	+0.5
1,022,297	+		PGA1_c09880	0.85	+0.7
1,022,317	-		PGA1_c09880	0.86	+1.7
1,022,389	+		PGA1_c09880	0.89	-2.2
1,022,451	+				-1.8
1,022,456	+				-3.0
1,022,519	+				+0.3
1,022,553	+				+1.2
1,022,688	+				-1.5
1,022,688	+				-2.9
1,022,725	+				-1.1
1,022,807	-				-0.3
1,022,946	-		PGA1_c09890	0.74	-0.0
1,022,985	-				-1.1
1,023,048	-				-0.8
1,023,087	+				+4.9
1,023,087	+				+1.9
1,023,087	+				+2.3
1,023,087	+				+2.5
1,023,087	+				+1.1
1,023,087	+				-2.0
1,023,087	+				+2.2
1,023,087	+				-0.2
1,023,087	+				+2.0
1,023,087	+				+0.7
1,023,087	+				-0.4
1,023,087	+				+0.8
1,023,087	+				-0.1
1,023,087	+				-0.7
1,023,087	+				+0.3
1,023,087	+				+1.0
1,023,087	+				-0.5
1,023,087	+				+1.3
1,023,087	+				-1.4
1,023,087	+				-0.1
1,023,087	+				-1.2
1,023,087	+				+2.2
1,023,087	+				-0.4
1,023,095	+				+2.5
1,023,095	-				-1.4
1,023,095	-				-0.2
1,023,095	-				+2.2
1,023,095	-				-0.2
1,023,095	-				+0.1
1,023,095	-				+0.9
1,023,095	-				+0.6
1,023,095	-				-2.1
1,023,095	-				-0.2
1,023,095	-				-1.2
1,023,095	-				-0.4
1,023,095	-				+2.3
1,023,095	-				-1.6
1,023,095	-				-1.1
1,023,095	-				-0.5
1,023,095	-				+0.7
1,023,095	-				-2.1
1,023,095	-				-1.1
1,023,236	-				+1.4
1,023,303	+				+0.8
1,023,316	-				+2.6
1,023,345	+				+0.1
1,023,353	-				+0.8
1,023,359	+				+1.0
1,023,359	+				+0.5
1,023,359	+				+2.0
1,023,458	-		PGA1_c09900	0.11	-1.7
1,023,638	+		PGA1_c09900	0.19	+1.6
1,023,659	+		PGA1_c09900	0.20	+0.6
1,023,659	+		PGA1_c09900	0.20	-1.1