Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_87 and HP15_88 overlap by 4 nucleotides HP15_88 and HP15_89 are separated by 63 nucleotides HP15_89 and HP15_90 are separated by 61 nucleotides HP15_90 and HP15_91 overlap by 4 nucleotides
HP15_87: HP15_87 - disulfide oxidoreductase C BdbC, at 93,494 to 93,928
_87
HP15_88: HP15_88 - cation efflux protein, at 93,925 to 94,650
_88
HP15_89: HP15_89 - transcriptional regulator, MerR family protein, at 94,714 to 95,127
_89
HP15_90: HP15_90 - electron transport protein SCO1/SenC, at 95,189 to 95,812
_90
HP15_91: HP15_91 - conserved hypothetical protein, membrane, at 95,809 to 96,651
_91
Position (kb) 94
95
96 Strain fitness (log2 ratio) -1
0
1
2 at 93.720 kb on - strand, within HP15_87 at 93.798 kb on + strand, within HP15_87 at 93.811 kb on - strand, within HP15_87 at 93.813 kb on + strand, within HP15_87 at 93.995 kb on - strand at 94.000 kb on + strand, within HP15_88 at 94.002 kb on + strand, within HP15_88 at 94.127 kb on - strand, within HP15_88 at 94.137 kb on + strand, within HP15_88 at 94.139 kb on + strand, within HP15_88 at 94.145 kb on - strand, within HP15_88 at 94.147 kb on - strand, within HP15_88 at 94.147 kb on - strand, within HP15_88 at 94.153 kb on + strand, within HP15_88 at 94.161 kb on - strand, within HP15_88 at 94.210 kb on + strand, within HP15_88 at 94.235 kb on - strand, within HP15_88 at 94.260 kb on + strand, within HP15_88 at 94.315 kb on - strand, within HP15_88 at 94.410 kb on - strand, within HP15_88 at 94.506 kb on + strand, within HP15_88 at 94.519 kb on - strand, within HP15_88 at 94.577 kb on + strand, within HP15_88 at 94.599 kb on - strand at 94.667 kb on - strand at 94.667 kb on - strand at 94.699 kb on - strand at 94.702 kb on + strand at 94.709 kb on + strand at 94.709 kb on + strand at 94.900 kb on - strand, within HP15_89 at 94.912 kb on - strand, within HP15_89 at 95.052 kb on - strand, within HP15_89 at 95.062 kb on - strand, within HP15_89 at 95.110 kb on + strand at 95.120 kb on - strand at 95.120 kb on - strand at 95.147 kb on - strand at 95.148 kb on + strand at 95.148 kb on + strand at 95.148 kb on + strand at 95.148 kb on + strand at 95.148 kb on + strand at 95.148 kb on + strand at 95.158 kb on + strand at 95.166 kb on - strand at 95.169 kb on + strand at 95.366 kb on - strand, within HP15_90 at 95.384 kb on + strand, within HP15_90 at 95.392 kb on - strand, within HP15_90 at 95.624 kb on - strand, within HP15_90 at 95.640 kb on - strand, within HP15_90 at 95.758 kb on + strand at 95.758 kb on + strand at 95.889 kb on - strand at 95.918 kb on + strand, within HP15_91 at 95.919 kb on + strand, within HP15_91 at 95.921 kb on + strand, within HP15_91 at 95.921 kb on + strand, within HP15_91 at 95.929 kb on - strand, within HP15_91 at 95.929 kb on - strand, within HP15_91
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 5 mM remove 93,720 - HP15_87 0.52 -0.3 93,798 + HP15_87 0.70 -0.2 93,811 - HP15_87 0.73 -0.5 93,813 + HP15_87 0.73 +0.9 93,995 - -0.4 94,000 + HP15_88 0.10 +1.9 94,002 + HP15_88 0.11 -0.5 94,127 - HP15_88 0.28 -0.2 94,137 + HP15_88 0.29 +0.1 94,139 + HP15_88 0.29 -0.1 94,145 - HP15_88 0.30 -0.0 94,147 - HP15_88 0.31 +0.3 94,147 - HP15_88 0.31 -1.0 94,153 + HP15_88 0.31 -1.2 94,161 - HP15_88 0.33 +0.2 94,210 + HP15_88 0.39 -1.3 94,235 - HP15_88 0.43 -0.1 94,260 + HP15_88 0.46 -0.3 94,315 - HP15_88 0.54 -0.5 94,410 - HP15_88 0.67 -1.0 94,506 + HP15_88 0.80 +0.7 94,519 - HP15_88 0.82 +0.6 94,577 + HP15_88 0.90 -0.2 94,599 - -0.3 94,667 - -0.2 94,667 - -0.4 94,699 - +0.4 94,702 + +0.3 94,709 + -0.2 94,709 + +0.5 94,900 - HP15_89 0.45 -1.3 94,912 - HP15_89 0.48 -0.2 95,052 - HP15_89 0.82 -0.7 95,062 - HP15_89 0.84 -0.7 95,110 + -0.3 95,120 - -0.0 95,120 - -0.3 95,147 - +0.1 95,148 + +0.3 95,148 + -0.5 95,148 + +0.4 95,148 + +0.5 95,148 + -0.8 95,148 + +0.0 95,158 + -0.3 95,166 - +0.5 95,169 + +0.1 95,366 - HP15_90 0.28 -0.4 95,384 + HP15_90 0.31 -0.1 95,392 - HP15_90 0.33 -0.3 95,624 - HP15_90 0.70 -0.4 95,640 - HP15_90 0.72 -0.0 95,758 + +0.0 95,758 + +0.4 95,889 - +0.0 95,918 + HP15_91 0.13 +0.1 95,919 + HP15_91 0.13 +0.0 95,921 + HP15_91 0.13 +0.3 95,921 + HP15_91 0.13 -0.5 95,929 - HP15_91 0.14 +1.0 95,929 - HP15_91 0.14 -1.1
Or see this region's nucleotide sequence