Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08920 and PGA1_c08930 are separated by 1 nucleotides PGA1_c08930 and PGA1_c08940 overlap by 4 nucleotides PGA1_c08940 and PGA1_c08950 are separated by 232 nucleotides
PGA1_c08920: PGA1_c08920 - 3,4-dihydroxy-2-butanone 4-phosphate synthase RibB, at 922,039 to 923,160
_c08920
PGA1_c08930: PGA1_c08930 - 6,7-dimethyl-8-ribityllumazine synthase RibH, at 923,162 to 923,713
_c08930
PGA1_c08940: PGA1_c08940 - N utilization substance protein B homolog, at 923,710 to 924,201
_c08940
PGA1_c08950: PGA1_c08950 - hypothetical protein, at 924,434 to 924,763
_c08950
Position (kb) 923
924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 922.174 kb on + strand, within PGA1_c08920 at 922.243 kb on - strand, within PGA1_c08920 at 922.303 kb on + strand, within PGA1_c08920 at 922.368 kb on - strand, within PGA1_c08920 at 922.401 kb on - strand, within PGA1_c08920 at 922.420 kb on - strand, within PGA1_c08920 at 922.422 kb on + strand, within PGA1_c08920 at 922.556 kb on - strand, within PGA1_c08920 at 922.561 kb on - strand, within PGA1_c08920 at 922.718 kb on - strand, within PGA1_c08920 at 922.826 kb on - strand, within PGA1_c08920 at 922.828 kb on + strand, within PGA1_c08920 at 922.836 kb on - strand, within PGA1_c08920 at 922.836 kb on - strand, within PGA1_c08920 at 922.836 kb on - strand, within PGA1_c08920 at 922.915 kb on - strand, within PGA1_c08920 at 922.915 kb on - strand, within PGA1_c08920 at 922.970 kb on - strand, within PGA1_c08920 at 922.986 kb on + strand, within PGA1_c08920 at 923.006 kb on + strand, within PGA1_c08920 at 923.006 kb on + strand, within PGA1_c08920 at 923.014 kb on - strand, within PGA1_c08920 at 923.014 kb on - strand, within PGA1_c08920 at 923.038 kb on - strand, within PGA1_c08920 at 923.053 kb on - strand at 923.111 kb on + strand at 923.111 kb on + strand at 923.111 kb on + strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.153 kb on - strand at 923.171 kb on + strand at 923.179 kb on - strand at 923.303 kb on + strand, within PGA1_c08930 at 923.318 kb on - strand, within PGA1_c08930 at 923.318 kb on - strand, within PGA1_c08930 at 923.318 kb on - strand, within PGA1_c08930 at 923.337 kb on + strand, within PGA1_c08930 at 923.399 kb on + strand, within PGA1_c08930 at 923.407 kb on - strand, within PGA1_c08930 at 923.407 kb on - strand, within PGA1_c08930 at 923.432 kb on - strand, within PGA1_c08930 at 923.442 kb on - strand, within PGA1_c08930 at 923.481 kb on + strand, within PGA1_c08930 at 923.484 kb on + strand, within PGA1_c08930 at 923.488 kb on - strand, within PGA1_c08930 at 924.224 kb on + strand at 924.224 kb on + strand at 924.224 kb on + strand at 924.227 kb on + strand at 924.229 kb on + strand at 924.232 kb on - strand at 924.232 kb on - strand at 924.232 kb on - strand at 924.232 kb on - strand at 924.237 kb on + strand at 924.237 kb on - strand at 924.237 kb on - strand at 924.245 kb on - strand at 924.282 kb on + strand at 924.283 kb on - strand at 924.417 kb on + strand at 924.502 kb on - strand, within PGA1_c08950 at 924.552 kb on - strand, within PGA1_c08950 at 924.581 kb on + strand, within PGA1_c08950 at 924.591 kb on - strand, within PGA1_c08950 at 924.706 kb on + strand, within PGA1_c08950
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 922,174 + PGA1_c08920 0.12 +0.3 922,243 - PGA1_c08920 0.18 +0.4 922,303 + PGA1_c08920 0.24 +0.7 922,368 - PGA1_c08920 0.29 -1.1 922,401 - PGA1_c08920 0.32 -3.0 922,420 - PGA1_c08920 0.34 +0.1 922,422 + PGA1_c08920 0.34 -1.7 922,556 - PGA1_c08920 0.46 -1.8 922,561 - PGA1_c08920 0.47 +0.5 922,718 - PGA1_c08920 0.61 -2.6 922,826 - PGA1_c08920 0.70 -1.5 922,828 + PGA1_c08920 0.70 -1.9 922,836 - PGA1_c08920 0.71 -2.0 922,836 - PGA1_c08920 0.71 +0.2 922,836 - PGA1_c08920 0.71 -2.0 922,915 - PGA1_c08920 0.78 -1.6 922,915 - PGA1_c08920 0.78 -1.4 922,970 - PGA1_c08920 0.83 +1.1 922,986 + PGA1_c08920 0.84 -0.3 923,006 + PGA1_c08920 0.86 +0.5 923,006 + PGA1_c08920 0.86 -1.9 923,014 - PGA1_c08920 0.87 +0.4 923,014 - PGA1_c08920 0.87 -3.0 923,038 - PGA1_c08920 0.89 -2.6 923,053 - +2.5 923,111 + -0.1 923,111 + -0.1 923,111 + +0.6 923,119 - -0.2 923,119 - -0.2 923,119 - -0.8 923,119 - +1.1 923,119 - -1.5 923,119 - -2.9 923,119 - -1.3 923,153 - +1.2 923,171 + -3.2 923,179 - -1.4 923,303 + PGA1_c08930 0.26 -2.6 923,318 - PGA1_c08930 0.28 +0.8 923,318 - PGA1_c08930 0.28 -0.3 923,318 - PGA1_c08930 0.28 -0.1 923,337 + PGA1_c08930 0.32 -1.3 923,399 + PGA1_c08930 0.43 +0.4 923,407 - PGA1_c08930 0.44 -0.8 923,407 - PGA1_c08930 0.44 -1.1 923,432 - PGA1_c08930 0.49 -0.8 923,442 - PGA1_c08930 0.51 -0.6 923,481 + PGA1_c08930 0.58 -1.5 923,484 + PGA1_c08930 0.58 -3.6 923,488 - PGA1_c08930 0.59 -1.2 924,224 + +0.7 924,224 + -0.1 924,224 + -0.1 924,227 + +0.9 924,229 + -0.5 924,232 - -3.3 924,232 - -2.3 924,232 - +0.7 924,232 - -0.1 924,237 + +0.0 924,237 - -0.7 924,237 - +2.1 924,245 - -0.2 924,282 + +0.5 924,283 - +0.5 924,417 + -0.5 924,502 - PGA1_c08950 0.21 -1.3 924,552 - PGA1_c08950 0.36 +0.4 924,581 + PGA1_c08950 0.45 -0.3 924,591 - PGA1_c08950 0.48 -1.3 924,706 + PGA1_c08950 0.82 -0.1
Or see this region's nucleotide sequence