Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08890

Experiment: m.b. nitrite 8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08880 and PGA1_c08890 are separated by 4 nucleotidesPGA1_c08890 and PGA1_c08900 are separated by 96 nucleotides PGA1_c08880: PGA1_c08880 - capsule polysaccharide export protein KpsC, at 916,284 to 918,314 _c08880 PGA1_c08890: PGA1_c08890 - putative capsule polysaccharide export outer membrane protein, at 918,319 to 919,455 _c08890 PGA1_c08900: PGA1_c08900 - putative capsule polysaccharide export protein KpsS, at 919,552 to 920,844 _c08900 Position (kb) 918 919 920Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 917.387 kb on - strand, within PGA1_c08880at 917.415 kb on - strand, within PGA1_c08880at 917.475 kb on + strand, within PGA1_c08880at 917.483 kb on - strand, within PGA1_c08880at 917.496 kb on - strand, within PGA1_c08880at 917.531 kb on - strand, within PGA1_c08880at 917.563 kb on - strand, within PGA1_c08880at 917.580 kb on + strand, within PGA1_c08880at 917.598 kb on - strand, within PGA1_c08880at 917.631 kb on - strand, within PGA1_c08880at 917.692 kb on - strand, within PGA1_c08880at 917.776 kb on - strand, within PGA1_c08880at 917.798 kb on - strand, within PGA1_c08880at 917.840 kb on - strand, within PGA1_c08880at 917.882 kb on + strand, within PGA1_c08880at 917.885 kb on - strand, within PGA1_c08880at 917.898 kb on - strand, within PGA1_c08880at 917.974 kb on - strand, within PGA1_c08880at 917.981 kb on + strand, within PGA1_c08880at 917.989 kb on - strand, within PGA1_c08880at 918.002 kb on + strand, within PGA1_c08880at 918.094 kb on + strand, within PGA1_c08880at 918.099 kb on + strand, within PGA1_c08880at 918.100 kb on - strand, within PGA1_c08880at 918.131 kb on - strandat 918.142 kb on + strandat 918.147 kb on + strandat 918.147 kb on + strandat 918.155 kb on - strandat 918.186 kb on - strandat 918.194 kb on + strandat 918.194 kb on + strandat 918.196 kb on - strandat 918.202 kb on - strandat 918.202 kb on - strandat 918.202 kb on - strandat 918.202 kb on - strandat 918.280 kb on + strandat 918.288 kb on - strandat 918.315 kb on - strandat 918.331 kb on + strandat 918.396 kb on + strandat 918.458 kb on + strand, within PGA1_c08890at 918.466 kb on - strand, within PGA1_c08890at 918.502 kb on - strand, within PGA1_c08890at 918.525 kb on - strand, within PGA1_c08890at 918.607 kb on + strand, within PGA1_c08890at 918.610 kb on - strand, within PGA1_c08890at 918.699 kb on + strand, within PGA1_c08890at 918.712 kb on + strand, within PGA1_c08890at 918.765 kb on - strand, within PGA1_c08890at 919.092 kb on + strand, within PGA1_c08890at 919.095 kb on - strand, within PGA1_c08890at 919.100 kb on - strand, within PGA1_c08890at 919.194 kb on - strand, within PGA1_c08890at 919.220 kb on - strand, within PGA1_c08890at 919.343 kb on + strandat 919.348 kb on + strandat 919.351 kb on - strandat 919.380 kb on + strandat 919.433 kb on + strandat 919.447 kb on + strandat 919.493 kb on + strandat 919.500 kb on + strandat 919.505 kb on + strandat 919.513 kb on - strandat 919.513 kb on - strandat 919.513 kb on - strandat 919.513 kb on - strandat 919.513 kb on - strandat 919.592 kb on + strandat 919.685 kb on + strand, within PGA1_c08900at 919.703 kb on - strand, within PGA1_c08900at 919.713 kb on - strand, within PGA1_c08900at 919.737 kb on - strand, within PGA1_c08900at 919.815 kb on - strand, within PGA1_c08900at 919.950 kb on + strand, within PGA1_c08900at 919.958 kb on - strand, within PGA1_c08900at 919.958 kb on - strand, within PGA1_c08900at 920.051 kb on + strand, within PGA1_c08900at 920.054 kb on - strand, within PGA1_c08900at 920.110 kb on + strand, within PGA1_c08900at 920.112 kb on - strand, within PGA1_c08900at 920.121 kb on + strand, within PGA1_c08900at 920.129 kb on - strand, within PGA1_c08900at 920.306 kb on - strand, within PGA1_c08900at 920.336 kb on - strand, within PGA1_c08900at 920.369 kb on - strand, within PGA1_c08900at 920.374 kb on - strand, within PGA1_c08900at 920.380 kb on - strand, within PGA1_c08900

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM
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917,387 - PGA1_c08880 0.54 -3.1
917,415 - PGA1_c08880 0.56 -1.5
917,475 + PGA1_c08880 0.59 -1.9
917,483 - PGA1_c08880 0.59 -0.8
917,496 - PGA1_c08880 0.60 +0.4
917,531 - PGA1_c08880 0.61 -0.3
917,563 - PGA1_c08880 0.63 +1.9
917,580 + PGA1_c08880 0.64 +1.7
917,598 - PGA1_c08880 0.65 -2.6
917,631 - PGA1_c08880 0.66 +0.8
917,692 - PGA1_c08880 0.69 +1.1
917,776 - PGA1_c08880 0.73 -1.0
917,798 - PGA1_c08880 0.75 +0.9
917,840 - PGA1_c08880 0.77 -0.8
917,882 + PGA1_c08880 0.79 -1.8
917,885 - PGA1_c08880 0.79 -0.0
917,898 - PGA1_c08880 0.79 +1.2
917,974 - PGA1_c08880 0.83 +2.9
917,981 + PGA1_c08880 0.84 -0.5
917,989 - PGA1_c08880 0.84 -1.6
918,002 + PGA1_c08880 0.85 +0.7
918,094 + PGA1_c08880 0.89 -1.0
918,099 + PGA1_c08880 0.89 +0.1
918,100 - PGA1_c08880 0.89 +0.3
918,131 - +0.6
918,142 + -1.0
918,147 + -2.4
918,147 + -0.5
918,155 - -0.1
918,186 - -3.2
918,194 + -0.1
918,194 + +1.0
918,196 - -2.8
918,202 - -0.0
918,202 - -0.8
918,202 - +1.4
918,202 - -0.6
918,280 + +1.1
918,288 - -0.3
918,315 - +1.5
918,331 + -0.8
918,396 + +1.3
918,458 + PGA1_c08890 0.12 +0.3
918,466 - PGA1_c08890 0.13 +0.4
918,502 - PGA1_c08890 0.16 +0.6
918,525 - PGA1_c08890 0.18 -0.1
918,607 + PGA1_c08890 0.25 -0.2
918,610 - PGA1_c08890 0.26 -0.3
918,699 + PGA1_c08890 0.33 -2.9
918,712 + PGA1_c08890 0.35 +1.2
918,765 - PGA1_c08890 0.39 -0.8
919,092 + PGA1_c08890 0.68 +0.6
919,095 - PGA1_c08890 0.68 -1.2
919,100 - PGA1_c08890 0.69 -2.3
919,194 - PGA1_c08890 0.77 +0.5
919,220 - PGA1_c08890 0.79 +1.0
919,343 + +0.1
919,348 + -0.0
919,351 - -0.6
919,380 + -0.6
919,433 + -0.2
919,447 + -0.9
919,493 + -3.0
919,500 + -1.5
919,505 + -1.6
919,513 - +0.1
919,513 - -2.4
919,513 - +0.3
919,513 - -2.5
919,513 - +0.7
919,592 + -3.6
919,685 + PGA1_c08900 0.10 -3.0
919,703 - PGA1_c08900 0.12 -0.4
919,713 - PGA1_c08900 0.12 -0.0
919,737 - PGA1_c08900 0.14 -0.5
919,815 - PGA1_c08900 0.20 -1.8
919,950 + PGA1_c08900 0.31 -0.0
919,958 - PGA1_c08900 0.31 +1.2
919,958 - PGA1_c08900 0.31 -2.9
920,051 + PGA1_c08900 0.39 +0.2
920,054 - PGA1_c08900 0.39 -1.3
920,110 + PGA1_c08900 0.43 -1.1
920,112 - PGA1_c08900 0.43 +0.4
920,121 + PGA1_c08900 0.44 -0.3
920,129 - PGA1_c08900 0.45 -0.3
920,306 - PGA1_c08900 0.58 +0.2
920,336 - PGA1_c08900 0.61 -2.4
920,369 - PGA1_c08900 0.63 +0.9
920,374 - PGA1_c08900 0.64 +2.0
920,380 - PGA1_c08900 0.64 -0.8

Or see this region's nucleotide sequence