Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08650 and PGA1_c08660 are separated by 172 nucleotides PGA1_c08660 and PGA1_c08670 are separated by 97 nucleotides PGA1_c08670 and PGA1_c08680 are separated by 79 nucleotides
PGA1_c08650: PGA1_c08650 - homoserine dehydrogenase Hom, at 892,532 to 893,818
_c08650
PGA1_c08660: PGA1_c08660 - hypothetical protein, at 893,991 to 894,320
_c08660
PGA1_c08670: PGA1_c08670 - transcriptional regulator, TetR family, at 894,418 to 895,035
_c08670
PGA1_c08680: PGA1_c08680 - pirin-like protein, at 895,115 to 896,026
_c08680
Position (kb) 894
895
896 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 893.911 kb on + strand at 893.911 kb on + strand at 893.968 kb on - strand at 893.976 kb on + strand at 893.994 kb on + strand at 893.994 kb on + strand at 894.002 kb on - strand at 894.002 kb on - strand at 894.002 kb on - strand at 894.017 kb on - strand at 894.055 kb on - strand, within PGA1_c08660 at 894.055 kb on - strand, within PGA1_c08660 at 894.083 kb on - strand, within PGA1_c08660 at 894.083 kb on - strand, within PGA1_c08660 at 894.098 kb on + strand, within PGA1_c08660 at 894.120 kb on + strand, within PGA1_c08660 at 894.128 kb on - strand, within PGA1_c08660 at 894.128 kb on - strand, within PGA1_c08660 at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.313 kb on - strand at 894.339 kb on + strand at 894.347 kb on - strand at 894.347 kb on - strand at 894.347 kb on - strand at 894.417 kb on + strand at 894.426 kb on + strand at 894.511 kb on + strand, within PGA1_c08670 at 894.559 kb on + strand, within PGA1_c08670 at 894.561 kb on + strand, within PGA1_c08670 at 894.567 kb on + strand, within PGA1_c08670 at 894.602 kb on - strand, within PGA1_c08670 at 894.603 kb on + strand, within PGA1_c08670 at 894.653 kb on + strand, within PGA1_c08670 at 894.653 kb on + strand, within PGA1_c08670 at 894.658 kb on + strand, within PGA1_c08670 at 894.712 kb on + strand, within PGA1_c08670 at 894.713 kb on - strand, within PGA1_c08670 at 894.720 kb on - strand, within PGA1_c08670 at 894.721 kb on - strand, within PGA1_c08670 at 894.869 kb on + strand, within PGA1_c08670 at 894.877 kb on - strand, within PGA1_c08670 at 895.082 kb on - strand at 895.084 kb on - strand at 895.112 kb on + strand at 895.184 kb on - strand at 895.241 kb on - strand, within PGA1_c08680 at 895.249 kb on + strand, within PGA1_c08680 at 895.257 kb on - strand, within PGA1_c08680 at 895.266 kb on - strand, within PGA1_c08680 at 895.358 kb on + strand, within PGA1_c08680 at 895.359 kb on + strand, within PGA1_c08680 at 895.370 kb on - strand, within PGA1_c08680 at 895.567 kb on + strand, within PGA1_c08680 at 895.571 kb on + strand, within PGA1_c08680 at 895.619 kb on - strand, within PGA1_c08680 at 895.662 kb on + strand, within PGA1_c08680 at 895.669 kb on + strand, within PGA1_c08680 at 895.670 kb on - strand, within PGA1_c08680 at 895.670 kb on - strand, within PGA1_c08680 at 895.682 kb on + strand, within PGA1_c08680 at 895.748 kb on - strand, within PGA1_c08680 at 895.798 kb on + strand, within PGA1_c08680 at 895.801 kb on + strand, within PGA1_c08680 at 895.809 kb on - strand, within PGA1_c08680 at 895.814 kb on - strand, within PGA1_c08680 at 896.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 893,911 + +1.2 893,911 + -1.6 893,968 - +0.6 893,976 + -1.3 893,994 + -1.3 893,994 + -1.6 894,002 - -1.3 894,002 - -2.6 894,002 - +0.1 894,017 - +0.0 894,055 - PGA1_c08660 0.19 -3.9 894,055 - PGA1_c08660 0.19 -0.8 894,083 - PGA1_c08660 0.28 -0.7 894,083 - PGA1_c08660 0.28 +1.2 894,098 + PGA1_c08660 0.32 +1.2 894,120 + PGA1_c08660 0.39 +0.9 894,128 - PGA1_c08660 0.42 +1.5 894,128 - PGA1_c08660 0.42 -1.0 894,295 + +0.8 894,295 + -1.1 894,295 + -0.8 894,295 + -2.4 894,295 + -3.0 894,295 + -0.7 894,295 + +1.7 894,295 + -0.2 894,295 + -0.7 894,295 + +0.4 894,303 - +1.1 894,303 - -0.9 894,303 - -1.9 894,303 - +0.2 894,303 - +2.0 894,303 - +2.3 894,303 - -0.6 894,303 - +0.2 894,303 - -0.3 894,303 - +0.3 894,303 - -2.3 894,313 - -0.9 894,339 + -1.6 894,347 - +0.1 894,347 - -2.9 894,347 - +0.9 894,417 + +0.2 894,426 + -3.4 894,511 + PGA1_c08670 0.15 +0.1 894,559 + PGA1_c08670 0.23 +0.7 894,561 + PGA1_c08670 0.23 -1.5 894,567 + PGA1_c08670 0.24 -1.4 894,602 - PGA1_c08670 0.30 +0.6 894,603 + PGA1_c08670 0.30 -0.3 894,653 + PGA1_c08670 0.38 -0.2 894,653 + PGA1_c08670 0.38 +0.1 894,658 + PGA1_c08670 0.39 -1.4 894,712 + PGA1_c08670 0.48 -0.0 894,713 - PGA1_c08670 0.48 -1.8 894,720 - PGA1_c08670 0.49 -1.8 894,721 - PGA1_c08670 0.49 -1.5 894,869 + PGA1_c08670 0.73 -1.0 894,877 - PGA1_c08670 0.74 -2.7 895,082 - +0.2 895,084 - -1.6 895,112 + -0.3 895,184 - +0.3 895,241 - PGA1_c08680 0.14 -1.6 895,249 + PGA1_c08680 0.15 -0.6 895,257 - PGA1_c08680 0.16 +0.1 895,266 - PGA1_c08680 0.17 -2.4 895,358 + PGA1_c08680 0.27 -0.7 895,359 + PGA1_c08680 0.27 +0.1 895,370 - PGA1_c08680 0.28 -1.1 895,567 + PGA1_c08680 0.50 +0.1 895,571 + PGA1_c08680 0.50 +1.5 895,619 - PGA1_c08680 0.55 -1.3 895,662 + PGA1_c08680 0.60 +0.2 895,669 + PGA1_c08680 0.61 -1.6 895,670 - PGA1_c08680 0.61 -0.4 895,670 - PGA1_c08680 0.61 -0.2 895,682 + PGA1_c08680 0.62 +0.7 895,748 - PGA1_c08680 0.69 -1.0 895,798 + PGA1_c08680 0.75 -2.9 895,801 + PGA1_c08680 0.75 -2.3 895,809 - PGA1_c08680 0.76 -0.5 895,814 - PGA1_c08680 0.77 -2.5 896,034 - -0.2
Or see this region's nucleotide sequence