Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_817 and HP15_818 are separated by 256 nucleotides HP15_818 and HP15_819 are separated by 41 nucleotides HP15_819 and HP15_820 are separated by 3 nucleotides
HP15_817: HP15_817 - 3-isopropylmalate dehydrogenase, at 835,335 to 836,489
_817
HP15_818: HP15_818 - protein containing diguanylate phosphodiesterase, predicted domains, at 836,746 to 837,453
_818
HP15_819: HP15_819 - conserved hypothetical protein, membrane, at 837,495 to 837,839
_819
HP15_820: HP15_820 - transcriptional regulator, LysR family protein, at 837,843 to 838,736
_820
Position (kb) 836
837
838 Strain fitness (log2 ratio) -1
0
1
2 at 835.846 kb on + strand, within HP15_817 at 836.174 kb on - strand, within HP15_817 at 836.266 kb on + strand, within HP15_817 at 836.305 kb on - strand, within HP15_817 at 836.405 kb on - strand at 836.459 kb on + strand at 836.467 kb on - strand at 836.493 kb on + strand at 836.808 kb on + strand at 836.943 kb on - strand, within HP15_818 at 836.992 kb on + strand, within HP15_818 at 836.993 kb on - strand, within HP15_818 at 837.030 kb on + strand, within HP15_818 at 837.090 kb on - strand, within HP15_818 at 837.136 kb on - strand, within HP15_818 at 837.209 kb on - strand, within HP15_818 at 837.243 kb on - strand, within HP15_818 at 837.321 kb on + strand, within HP15_818 at 837.393 kb on + strand at 837.481 kb on - strand at 837.654 kb on - strand, within HP15_819 at 837.853 kb on + strand at 837.966 kb on - strand, within HP15_820 at 838.088 kb on - strand, within HP15_820 at 838.103 kb on + strand, within HP15_820 at 838.237 kb on + strand, within HP15_820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 5 mM remove 835,846 + HP15_817 0.44 +0.6 836,174 - HP15_817 0.73 -0.1 836,266 + HP15_817 0.81 -0.3 836,305 - HP15_817 0.84 -0.6 836,405 - -0.2 836,459 + +0.1 836,467 - -0.4 836,493 + -0.1 836,808 + +0.1 836,943 - HP15_818 0.28 -0.1 836,992 + HP15_818 0.35 -0.2 836,993 - HP15_818 0.35 +0.4 837,030 + HP15_818 0.40 -0.7 837,090 - HP15_818 0.49 -0.6 837,136 - HP15_818 0.55 +0.1 837,209 - HP15_818 0.65 +0.7 837,243 - HP15_818 0.70 -0.8 837,321 + HP15_818 0.81 +2.0 837,393 + -0.9 837,481 - +0.3 837,654 - HP15_819 0.46 -0.2 837,853 + +0.6 837,966 - HP15_820 0.14 +0.3 838,088 - HP15_820 0.27 +0.2 838,103 + HP15_820 0.29 +0.3 838,237 + HP15_820 0.44 -0.2
Or see this region's nucleotide sequence