Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00760

Experiment: m.b. nitrite 8 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c00740 and PGA1_c00750 are separated by 188 nucleotidesPGA1_c00750 and PGA1_c00760 are separated by 36 nucleotidesPGA1_c00760 and PGA1_c00770 are separated by 158 nucleotidesPGA1_c00770 and PGA1_c00780 are separated by 123 nucleotides PGA1_c00740: PGA1_c00740 - ATP synthase B chain, at 72,164 to 72,724 _c00740 PGA1_c00750: PGA1_c00750 - UDP-N-acetylglucosamine acyltransferase-like protein, at 72,913 to 73,662 _c00750 PGA1_c00760: PGA1_c00760 - putative pyruvate dehydrogenase complex repressor, at 73,699 to 74,469 _c00760 PGA1_c00770: PGA1_c00770 - hypothetical protein, at 74,628 to 74,966 _c00770 PGA1_c00780: PGA1_c00780 - putative chromosome segregation protein SMC, at 75,090 to 78,545 _c00780 Position (kb) 73 74 75Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 72.706 kb on - strandat 72.718 kb on + strandat 72.742 kb on - strandat 72.810 kb on - strandat 72.812 kb on - strandat 72.857 kb on - strandat 72.869 kb on + strandat 72.877 kb on - strandat 72.879 kb on + strandat 72.887 kb on - strandat 72.949 kb on + strandat 72.953 kb on + strandat 72.956 kb on - strandat 73.032 kb on - strand, within PGA1_c00750at 73.073 kb on + strand, within PGA1_c00750at 73.073 kb on + strand, within PGA1_c00750at 73.073 kb on + strand, within PGA1_c00750at 73.073 kb on + strand, within PGA1_c00750at 73.073 kb on + strand, within PGA1_c00750at 73.073 kb on + strand, within PGA1_c00750at 73.081 kb on - strand, within PGA1_c00750at 73.081 kb on - strand, within PGA1_c00750at 73.083 kb on + strand, within PGA1_c00750at 73.083 kb on + strand, within PGA1_c00750at 73.083 kb on + strand, within PGA1_c00750at 73.177 kb on - strand, within PGA1_c00750at 73.230 kb on + strand, within PGA1_c00750at 73.249 kb on + strand, within PGA1_c00750at 73.255 kb on - strand, within PGA1_c00750at 73.256 kb on + strand, within PGA1_c00750at 73.257 kb on - strand, within PGA1_c00750at 73.282 kb on - strand, within PGA1_c00750at 73.282 kb on - strand, within PGA1_c00750at 73.285 kb on - strand, within PGA1_c00750at 73.288 kb on + strand, within PGA1_c00750at 73.296 kb on - strand, within PGA1_c00750at 73.331 kb on + strand, within PGA1_c00750at 73.339 kb on - strand, within PGA1_c00750at 73.375 kb on - strand, within PGA1_c00750at 73.377 kb on - strand, within PGA1_c00750at 73.377 kb on - strand, within PGA1_c00750at 73.434 kb on + strand, within PGA1_c00750at 73.458 kb on + strand, within PGA1_c00750at 73.458 kb on + strand, within PGA1_c00750at 73.458 kb on + strand, within PGA1_c00750at 73.466 kb on - strand, within PGA1_c00750at 73.533 kb on + strand, within PGA1_c00750at 73.538 kb on - strand, within PGA1_c00750at 73.579 kb on + strand, within PGA1_c00750at 73.579 kb on + strand, within PGA1_c00750at 73.583 kb on + strand, within PGA1_c00750at 73.658 kb on - strandat 73.674 kb on - strandat 73.703 kb on - strandat 73.710 kb on - strandat 73.712 kb on + strandat 73.740 kb on + strandat 73.782 kb on + strand, within PGA1_c00760at 73.782 kb on + strand, within PGA1_c00760at 73.790 kb on - strand, within PGA1_c00760at 73.790 kb on - strand, within PGA1_c00760at 73.800 kb on - strand, within PGA1_c00760at 73.800 kb on - strand, within PGA1_c00760at 73.801 kb on + strand, within PGA1_c00760at 73.864 kb on + strand, within PGA1_c00760at 73.864 kb on + strand, within PGA1_c00760at 73.864 kb on + strand, within PGA1_c00760at 73.939 kb on - strand, within PGA1_c00760at 74.037 kb on + strand, within PGA1_c00760at 74.045 kb on - strand, within PGA1_c00760at 74.045 kb on - strand, within PGA1_c00760at 74.045 kb on - strand, within PGA1_c00760at 74.064 kb on + strand, within PGA1_c00760at 74.064 kb on + strand, within PGA1_c00760at 74.231 kb on + strand, within PGA1_c00760at 74.246 kb on - strand, within PGA1_c00760at 74.346 kb on + strand, within PGA1_c00760at 74.363 kb on + strand, within PGA1_c00760at 74.364 kb on - strand, within PGA1_c00760at 74.381 kb on + strand, within PGA1_c00760at 74.381 kb on + strand, within PGA1_c00760at 74.381 kb on + strand, within PGA1_c00760at 74.389 kb on - strand, within PGA1_c00760at 74.400 kb on + strandat 74.424 kb on + strandat 74.424 kb on + strandat 74.432 kb on - strandat 74.432 kb on - strandat 74.437 kb on + strandat 74.448 kb on + strandat 74.473 kb on - strandat 74.473 kb on - strandat 74.504 kb on - strandat 74.525 kb on - strandat 74.525 kb on - strandat 74.535 kb on + strandat 74.536 kb on - strandat 74.536 kb on - strandat 74.536 kb on - strandat 74.573 kb on + strandat 74.586 kb on - strandat 74.619 kb on + strandat 74.619 kb on + strandat 74.619 kb on + strandat 74.622 kb on + strandat 74.622 kb on - strandat 74.627 kb on - strandat 74.628 kb on - strandat 74.628 kb on - strandat 74.628 kb on - strandat 74.629 kb on + strandat 74.647 kb on - strandat 74.660 kb on - strandat 74.696 kb on - strand, within PGA1_c00770at 74.710 kb on + strand, within PGA1_c00770at 74.754 kb on + strand, within PGA1_c00770at 74.754 kb on - strand, within PGA1_c00770at 74.762 kb on - strand, within PGA1_c00770at 74.764 kb on - strand, within PGA1_c00770at 74.775 kb on - strand, within PGA1_c00770at 74.801 kb on + strand, within PGA1_c00770at 74.834 kb on + strand, within PGA1_c00770at 74.892 kb on - strand, within PGA1_c00770at 74.892 kb on - strand, within PGA1_c00770at 74.901 kb on + strand, within PGA1_c00770at 74.901 kb on + strand, within PGA1_c00770at 74.909 kb on - strand, within PGA1_c00770at 74.909 kb on - strand, within PGA1_c00770at 74.948 kb on + strandat 75.001 kb on - strandat 75.012 kb on + strandat 75.200 kb on + strandat 75.224 kb on - strandat 75.307 kb on - strandat 75.333 kb on - strandat 75.404 kb on - strandat 75.445 kb on + strand, within PGA1_c00780at 75.445 kb on + strand, within PGA1_c00780

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM
remove
72,706 - +0.3
72,718 + +1.8
72,742 - +1.4
72,810 - -0.3
72,812 - +1.1
72,857 - +0.5
72,869 + -2.5
72,877 - +0.1
72,879 + +0.8
72,887 - -0.8
72,949 + +0.5
72,953 + -1.7
72,956 - -2.2
73,032 - PGA1_c00750 0.16 +0.0
73,073 + PGA1_c00750 0.21 -3.2
73,073 + PGA1_c00750 0.21 +2.1
73,073 + PGA1_c00750 0.21 +0.5
73,073 + PGA1_c00750 0.21 -1.6
73,073 + PGA1_c00750 0.21 -2.2
73,073 + PGA1_c00750 0.21 +1.3
73,081 - PGA1_c00750 0.22 -1.1
73,081 - PGA1_c00750 0.22 -3.1
73,083 + PGA1_c00750 0.23 -2.6
73,083 + PGA1_c00750 0.23 -0.6
73,083 + PGA1_c00750 0.23 -1.9
73,177 - PGA1_c00750 0.35 +1.1
73,230 + PGA1_c00750 0.42 -1.4
73,249 + PGA1_c00750 0.45 -1.7
73,255 - PGA1_c00750 0.46 -0.2
73,256 + PGA1_c00750 0.46 +2.3
73,257 - PGA1_c00750 0.46 +3.1
73,282 - PGA1_c00750 0.49 +0.5
73,282 - PGA1_c00750 0.49 -2.0
73,285 - PGA1_c00750 0.50 -1.6
73,288 + PGA1_c00750 0.50 -0.9
73,296 - PGA1_c00750 0.51 +0.6
73,331 + PGA1_c00750 0.56 -0.2
73,339 - PGA1_c00750 0.57 +1.3
73,375 - PGA1_c00750 0.62 -3.2
73,377 - PGA1_c00750 0.62 -1.8
73,377 - PGA1_c00750 0.62 -0.2
73,434 + PGA1_c00750 0.69 -3.3
73,458 + PGA1_c00750 0.73 -2.4
73,458 + PGA1_c00750 0.73 -1.7
73,458 + PGA1_c00750 0.73 -2.6
73,466 - PGA1_c00750 0.74 -0.8
73,533 + PGA1_c00750 0.83 -0.2
73,538 - PGA1_c00750 0.83 +0.4
73,579 + PGA1_c00750 0.89 +0.4
73,579 + PGA1_c00750 0.89 -1.2
73,583 + PGA1_c00750 0.89 -0.4
73,658 - -0.1
73,674 - -1.1
73,703 - +0.2
73,710 - -1.4
73,712 + +0.6
73,740 + -2.1
73,782 + PGA1_c00760 0.11 -1.4
73,782 + PGA1_c00760 0.11 +1.0
73,790 - PGA1_c00760 0.12 -0.0
73,790 - PGA1_c00760 0.12 -1.7
73,800 - PGA1_c00760 0.13 -2.2
73,800 - PGA1_c00760 0.13 +0.3
73,801 + PGA1_c00760 0.13 -0.1
73,864 + PGA1_c00760 0.21 -1.8
73,864 + PGA1_c00760 0.21 -1.7
73,864 + PGA1_c00760 0.21 -0.6
73,939 - PGA1_c00760 0.31 -0.7
74,037 + PGA1_c00760 0.44 -2.3
74,045 - PGA1_c00760 0.45 +0.2
74,045 - PGA1_c00760 0.45 -0.8
74,045 - PGA1_c00760 0.45 -0.5
74,064 + PGA1_c00760 0.47 -0.6
74,064 + PGA1_c00760 0.47 -1.1
74,231 + PGA1_c00760 0.69 -0.1
74,246 - PGA1_c00760 0.71 -1.9
74,346 + PGA1_c00760 0.84 +1.8
74,363 + PGA1_c00760 0.86 -0.9
74,364 - PGA1_c00760 0.86 +0.3
74,381 + PGA1_c00760 0.88 -1.1
74,381 + PGA1_c00760 0.88 -0.8
74,381 + PGA1_c00760 0.88 -1.1
74,389 - PGA1_c00760 0.89 +1.4
74,400 + -1.8
74,424 + -0.6
74,424 + +2.1
74,432 - -0.8
74,432 - -0.2
74,437 + +0.3
74,448 + -2.2
74,473 - -3.2
74,473 - +1.2
74,504 - -2.7
74,525 - -0.7
74,525 - +0.6
74,535 + +0.2
74,536 - +0.6
74,536 - -2.2
74,536 - -1.5
74,573 + +0.3
74,586 - -2.7
74,619 + +1.0
74,619 + +0.3
74,619 + +1.5
74,622 + -1.1
74,622 - +1.4
74,627 - -2.6
74,628 - +0.9
74,628 - -0.2
74,628 - -1.9
74,629 + +0.4
74,647 - -2.4
74,660 - -0.9
74,696 - PGA1_c00770 0.20 +0.8
74,710 + PGA1_c00770 0.24 -0.3
74,754 + PGA1_c00770 0.37 -0.5
74,754 - PGA1_c00770 0.37 +0.7
74,762 - PGA1_c00770 0.40 -0.3
74,764 - PGA1_c00770 0.40 +2.4
74,775 - PGA1_c00770 0.43 -3.7
74,801 + PGA1_c00770 0.51 +1.2
74,834 + PGA1_c00770 0.61 +0.2
74,892 - PGA1_c00770 0.78 -0.2
74,892 - PGA1_c00770 0.78 -1.9
74,901 + PGA1_c00770 0.81 -0.7
74,901 + PGA1_c00770 0.81 +0.8
74,909 - PGA1_c00770 0.83 -2.2
74,909 - PGA1_c00770 0.83 -0.2
74,948 + +1.0
75,001 - -2.2
75,012 + -0.9
75,200 + -0.1
75,224 - -3.9
75,307 - +0.5
75,333 - -1.1
75,404 - -2.3
75,445 + PGA1_c00780 0.10 -2.2
75,445 + PGA1_c00780 0.10 -1.1

Or see this region's nucleotide sequence