Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07390 and PGA1_c07400 overlap by 4 nucleotides PGA1_c07400 and PGA1_c07410 overlap by 1 nucleotides PGA1_c07410 and PGA1_c07420 are separated by 150 nucleotides
PGA1_c07390: PGA1_c07390 - alpha-galactosidase RafA, at 761,587 to 763,686
_c07390
PGA1_c07400: PGA1_c07400 - binding protein dependent transport system permease, at 763,683 to 764,531
_c07400
PGA1_c07410: PGA1_c07410 - binding protein dependent transport system permease, at 764,531 to 765,478
_c07410
PGA1_c07420: PGA1_c07420 - extracellular solute-binding protein, at 765,629 to 766,879
_c07420
Position (kb) 764
765
766 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 763.694 kb on - strand at 763.704 kb on - strand at 763.782 kb on + strand, within PGA1_c07400 at 763.782 kb on + strand, within PGA1_c07400 at 763.782 kb on + strand, within PGA1_c07400 at 763.806 kb on - strand, within PGA1_c07400 at 763.829 kb on - strand, within PGA1_c07400 at 763.845 kb on + strand, within PGA1_c07400 at 763.941 kb on - strand, within PGA1_c07400 at 763.944 kb on + strand, within PGA1_c07400 at 763.952 kb on - strand, within PGA1_c07400 at 763.957 kb on + strand, within PGA1_c07400 at 763.992 kb on - strand, within PGA1_c07400 at 763.999 kb on + strand, within PGA1_c07400 at 764.046 kb on - strand, within PGA1_c07400 at 764.048 kb on - strand, within PGA1_c07400 at 764.084 kb on + strand, within PGA1_c07400 at 764.084 kb on + strand, within PGA1_c07400 at 764.236 kb on - strand, within PGA1_c07400 at 764.236 kb on - strand, within PGA1_c07400 at 764.236 kb on - strand, within PGA1_c07400 at 764.242 kb on + strand, within PGA1_c07400 at 764.242 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.250 kb on - strand, within PGA1_c07400 at 764.252 kb on + strand, within PGA1_c07400 at 764.255 kb on - strand, within PGA1_c07400 at 764.255 kb on - strand, within PGA1_c07400 at 764.255 kb on - strand, within PGA1_c07400 at 764.283 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.291 kb on - strand, within PGA1_c07400 at 764.293 kb on + strand, within PGA1_c07400 at 764.296 kb on - strand, within PGA1_c07400 at 764.296 kb on - strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.357 kb on + strand, within PGA1_c07400 at 764.357 kb on + strand, within PGA1_c07400 at 764.357 kb on + strand, within PGA1_c07400 at 764.362 kb on - strand, within PGA1_c07400 at 764.365 kb on - strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.382 kb on + strand, within PGA1_c07400 at 764.382 kb on - strand, within PGA1_c07400 at 764.389 kb on - strand, within PGA1_c07400 at 764.474 kb on + strand at 764.477 kb on + strand at 764.493 kb on - strand at 764.508 kb on + strand at 764.508 kb on + strand at 764.516 kb on - strand at 764.537 kb on - strand at 764.549 kb on - strand at 764.580 kb on + strand at 764.608 kb on - strand at 764.624 kb on + strand at 764.630 kb on + strand, within PGA1_c07410 at 764.632 kb on - strand, within PGA1_c07410 at 764.632 kb on - strand, within PGA1_c07410 at 764.705 kb on + strand, within PGA1_c07410 at 764.739 kb on - strand, within PGA1_c07410 at 764.840 kb on + strand, within PGA1_c07410 at 764.853 kb on + strand, within PGA1_c07410 at 764.853 kb on + strand, within PGA1_c07410 at 764.853 kb on + strand, within PGA1_c07410 at 764.861 kb on - strand, within PGA1_c07410 at 764.861 kb on - strand, within PGA1_c07410 at 764.863 kb on + strand, within PGA1_c07410 at 764.863 kb on + strand, within PGA1_c07410 at 764.878 kb on + strand, within PGA1_c07410 at 764.893 kb on + strand, within PGA1_c07410 at 764.922 kb on + strand, within PGA1_c07410 at 764.969 kb on + strand, within PGA1_c07410 at 764.977 kb on - strand, within PGA1_c07410 at 764.981 kb on + strand, within PGA1_c07410 at 764.986 kb on + strand, within PGA1_c07410 at 764.986 kb on + strand, within PGA1_c07410 at 764.986 kb on + strand, within PGA1_c07410 at 764.991 kb on + strand, within PGA1_c07410 at 764.991 kb on + strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.994 kb on - strand, within PGA1_c07410 at 764.999 kb on - strand, within PGA1_c07410 at 764.999 kb on - strand, within PGA1_c07410 at 765.000 kb on - strand, within PGA1_c07410 at 765.002 kb on + strand, within PGA1_c07410 at 765.005 kb on - strand, within PGA1_c07410 at 765.010 kb on - strand, within PGA1_c07410 at 765.010 kb on - strand, within PGA1_c07410 at 765.020 kb on - strand, within PGA1_c07410 at 765.037 kb on + strand, within PGA1_c07410 at 765.112 kb on + strand, within PGA1_c07410 at 765.120 kb on - strand, within PGA1_c07410 at 765.123 kb on + strand, within PGA1_c07410 at 765.131 kb on - strand, within PGA1_c07410 at 765.147 kb on + strand, within PGA1_c07410 at 765.155 kb on - strand, within PGA1_c07410 at 765.155 kb on - strand, within PGA1_c07410 at 765.160 kb on - strand, within PGA1_c07410 at 765.162 kb on + strand, within PGA1_c07410 at 765.182 kb on + strand, within PGA1_c07410 at 765.211 kb on - strand, within PGA1_c07410 at 765.211 kb on - strand, within PGA1_c07410 at 765.225 kb on - strand, within PGA1_c07410 at 765.261 kb on + strand, within PGA1_c07410 at 765.283 kb on + strand, within PGA1_c07410 at 765.286 kb on - strand, within PGA1_c07410 at 765.291 kb on - strand, within PGA1_c07410 at 765.291 kb on - strand, within PGA1_c07410 at 765.307 kb on + strand, within PGA1_c07410 at 765.307 kb on + strand, within PGA1_c07410 at 765.307 kb on + strand, within PGA1_c07410 at 765.315 kb on - strand, within PGA1_c07410 at 765.315 kb on - strand, within PGA1_c07410 at 765.315 kb on - strand, within PGA1_c07410 at 765.353 kb on + strand, within PGA1_c07410 at 765.390 kb on - strand at 765.462 kb on + strand at 765.472 kb on - strand at 765.478 kb on + strand at 765.530 kb on - strand at 765.591 kb on - strand at 765.591 kb on - strand at 765.630 kb on + strand at 765.638 kb on - strand at 765.638 kb on - strand at 765.670 kb on - strand at 765.673 kb on + strand at 765.673 kb on + strand at 765.681 kb on - strand at 765.681 kb on - strand at 765.701 kb on - strand at 765.711 kb on - strand at 765.718 kb on - strand at 765.771 kb on - strand, within PGA1_c07420 at 765.804 kb on - strand, within PGA1_c07420 at 765.838 kb on + strand, within PGA1_c07420 at 765.843 kb on + strand, within PGA1_c07420 at 765.843 kb on + strand, within PGA1_c07420 at 765.854 kb on + strand, within PGA1_c07420 at 765.873 kb on - strand, within PGA1_c07420 at 765.922 kb on - strand, within PGA1_c07420 at 765.936 kb on + strand, within PGA1_c07420 at 765.944 kb on - strand, within PGA1_c07420 at 765.944 kb on - strand, within PGA1_c07420 at 766.046 kb on + strand, within PGA1_c07420 at 766.051 kb on + strand, within PGA1_c07420 at 766.051 kb on + strand, within PGA1_c07420 at 766.124 kb on + strand, within PGA1_c07420 at 766.151 kb on - strand, within PGA1_c07420 at 766.157 kb on - strand, within PGA1_c07420 at 766.194 kb on - strand, within PGA1_c07420 at 766.222 kb on + strand, within PGA1_c07420 at 766.250 kb on - strand, within PGA1_c07420 at 766.255 kb on - strand, within PGA1_c07420 at 766.265 kb on + strand, within PGA1_c07420 at 766.314 kb on + strand, within PGA1_c07420 at 766.374 kb on - strand, within PGA1_c07420 at 766.387 kb on + strand, within PGA1_c07420 at 766.405 kb on - strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.423 kb on + strand, within PGA1_c07420 at 766.435 kb on + strand, within PGA1_c07420 at 766.443 kb on - strand, within PGA1_c07420 at 766.459 kb on + strand, within PGA1_c07420 at 766.466 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.474 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 763,694 - -1.3 763,704 - -2.1 763,782 + PGA1_c07400 0.12 +2.8 763,782 + PGA1_c07400 0.12 -1.8 763,782 + PGA1_c07400 0.12 -0.5 763,806 - PGA1_c07400 0.14 -3.3 763,829 - PGA1_c07400 0.17 +0.3 763,845 + PGA1_c07400 0.19 -0.8 763,941 - PGA1_c07400 0.30 +2.1 763,944 + PGA1_c07400 0.31 -0.6 763,952 - PGA1_c07400 0.32 +0.6 763,957 + PGA1_c07400 0.32 -0.0 763,992 - PGA1_c07400 0.36 -0.2 763,999 + PGA1_c07400 0.37 -0.5 764,046 - PGA1_c07400 0.43 -2.2 764,048 - PGA1_c07400 0.43 -1.1 764,084 + PGA1_c07400 0.47 +0.3 764,084 + PGA1_c07400 0.47 -0.6 764,236 - PGA1_c07400 0.65 -0.8 764,236 - PGA1_c07400 0.65 -3.0 764,236 - PGA1_c07400 0.65 -1.8 764,242 + PGA1_c07400 0.66 +0.7 764,242 + PGA1_c07400 0.66 +1.7 764,247 + PGA1_c07400 0.66 +0.9 764,247 + PGA1_c07400 0.66 -2.2 764,247 + PGA1_c07400 0.66 +1.2 764,247 + PGA1_c07400 0.66 -2.5 764,247 + PGA1_c07400 0.66 +0.3 764,250 - PGA1_c07400 0.67 +0.8 764,252 + PGA1_c07400 0.67 -1.0 764,255 - PGA1_c07400 0.67 -0.6 764,255 - PGA1_c07400 0.67 +1.7 764,255 - PGA1_c07400 0.67 -0.5 764,283 + PGA1_c07400 0.71 +0.4 764,288 + PGA1_c07400 0.71 +1.8 764,288 + PGA1_c07400 0.71 -1.0 764,288 + PGA1_c07400 0.71 +1.2 764,288 + PGA1_c07400 0.71 -0.5 764,291 - PGA1_c07400 0.72 +1.8 764,293 + PGA1_c07400 0.72 -1.6 764,296 - PGA1_c07400 0.72 -1.8 764,296 - PGA1_c07400 0.72 +1.7 764,354 + PGA1_c07400 0.79 -1.1 764,354 + PGA1_c07400 0.79 -3.3 764,354 + PGA1_c07400 0.79 -1.9 764,354 + PGA1_c07400 0.79 +0.7 764,357 + PGA1_c07400 0.79 -2.3 764,357 + PGA1_c07400 0.79 +0.6 764,357 + PGA1_c07400 0.79 -0.1 764,362 - PGA1_c07400 0.80 +0.5 764,365 - PGA1_c07400 0.80 +0.3 764,372 + PGA1_c07400 0.81 -1.4 764,372 + PGA1_c07400 0.81 -1.9 764,372 + PGA1_c07400 0.81 -1.0 764,372 + PGA1_c07400 0.81 +0.1 764,372 + PGA1_c07400 0.81 +0.1 764,372 + PGA1_c07400 0.81 +1.3 764,372 + PGA1_c07400 0.81 +2.1 764,380 - PGA1_c07400 0.82 -0.8 764,380 - PGA1_c07400 0.82 -1.8 764,380 - PGA1_c07400 0.82 +0.5 764,380 - PGA1_c07400 0.82 +0.3 764,380 - PGA1_c07400 0.82 +0.2 764,380 - PGA1_c07400 0.82 +2.1 764,382 + PGA1_c07400 0.82 +0.2 764,382 - PGA1_c07400 0.82 -0.0 764,389 - PGA1_c07400 0.83 -0.9 764,474 + +1.5 764,477 + +0.2 764,493 - -2.6 764,508 + -2.2 764,508 + -2.4 764,516 - -0.7 764,537 - +1.9 764,549 - -0.5 764,580 + +0.7 764,608 - +0.8 764,624 + +0.2 764,630 + PGA1_c07410 0.10 +2.0 764,632 - PGA1_c07410 0.11 +0.6 764,632 - PGA1_c07410 0.11 +0.1 764,705 + PGA1_c07410 0.18 +0.3 764,739 - PGA1_c07410 0.22 -3.8 764,840 + PGA1_c07410 0.33 -1.3 764,853 + PGA1_c07410 0.34 -0.2 764,853 + PGA1_c07410 0.34 -2.2 764,853 + PGA1_c07410 0.34 -1.8 764,861 - PGA1_c07410 0.35 -0.8 764,861 - PGA1_c07410 0.35 -0.5 764,863 + PGA1_c07410 0.35 +0.8 764,863 + PGA1_c07410 0.35 +1.4 764,878 + PGA1_c07410 0.37 -0.1 764,893 + PGA1_c07410 0.38 -1.0 764,922 + PGA1_c07410 0.41 -1.8 764,969 + PGA1_c07410 0.46 -2.9 764,977 - PGA1_c07410 0.47 +0.8 764,981 + PGA1_c07410 0.47 -1.5 764,986 + PGA1_c07410 0.48 +0.7 764,986 + PGA1_c07410 0.48 +0.4 764,986 + PGA1_c07410 0.48 -2.6 764,991 + PGA1_c07410 0.49 +0.5 764,991 + PGA1_c07410 0.49 -2.9 764,994 - PGA1_c07410 0.49 -1.8 764,994 - PGA1_c07410 0.49 +0.9 764,994 - PGA1_c07410 0.49 +0.4 764,994 - PGA1_c07410 0.49 +0.1 764,994 - PGA1_c07410 0.49 -3.0 764,994 - PGA1_c07410 0.49 -0.0 764,999 - PGA1_c07410 0.49 -1.1 764,999 - PGA1_c07410 0.49 -0.0 765,000 - PGA1_c07410 0.49 -1.0 765,002 + PGA1_c07410 0.50 -0.4 765,005 - PGA1_c07410 0.50 +0.2 765,010 - PGA1_c07410 0.51 -0.2 765,010 - PGA1_c07410 0.51 -0.7 765,020 - PGA1_c07410 0.52 -0.2 765,037 + PGA1_c07410 0.53 +0.5 765,112 + PGA1_c07410 0.61 -2.1 765,120 - PGA1_c07410 0.62 +0.2 765,123 + PGA1_c07410 0.62 +2.4 765,131 - PGA1_c07410 0.63 -1.7 765,147 + PGA1_c07410 0.65 -2.3 765,155 - PGA1_c07410 0.66 +2.3 765,155 - PGA1_c07410 0.66 -1.1 765,160 - PGA1_c07410 0.66 +0.3 765,162 + PGA1_c07410 0.67 -0.8 765,182 + PGA1_c07410 0.69 -0.8 765,211 - PGA1_c07410 0.72 +0.0 765,211 - PGA1_c07410 0.72 -1.0 765,225 - PGA1_c07410 0.73 -0.7 765,261 + PGA1_c07410 0.77 -2.3 765,283 + PGA1_c07410 0.79 -0.3 765,286 - PGA1_c07410 0.80 +0.3 765,291 - PGA1_c07410 0.80 -2.0 765,291 - PGA1_c07410 0.80 -1.5 765,307 + PGA1_c07410 0.82 -3.0 765,307 + PGA1_c07410 0.82 +0.3 765,307 + PGA1_c07410 0.82 +0.6 765,315 - PGA1_c07410 0.83 +2.6 765,315 - PGA1_c07410 0.83 +0.1 765,315 - PGA1_c07410 0.83 -1.0 765,353 + PGA1_c07410 0.87 +1.4 765,390 - -1.0 765,462 + -0.9 765,472 - -0.6 765,478 + -0.8 765,530 - +0.5 765,591 - -0.7 765,591 - +0.4 765,630 + +0.5 765,638 - -0.3 765,638 - +3.0 765,670 - -0.7 765,673 + -3.2 765,673 + -0.5 765,681 - -3.6 765,681 - +1.0 765,701 - -0.0 765,711 - +2.8 765,718 - -2.3 765,771 - PGA1_c07420 0.11 -0.0 765,804 - PGA1_c07420 0.14 -0.9 765,838 + PGA1_c07420 0.17 -2.2 765,843 + PGA1_c07420 0.17 -1.5 765,843 + PGA1_c07420 0.17 +0.3 765,854 + PGA1_c07420 0.18 -1.3 765,873 - PGA1_c07420 0.20 -2.3 765,922 - PGA1_c07420 0.23 -1.3 765,936 + PGA1_c07420 0.25 -0.5 765,944 - PGA1_c07420 0.25 +1.2 765,944 - PGA1_c07420 0.25 +0.9 766,046 + PGA1_c07420 0.33 -1.2 766,051 + PGA1_c07420 0.34 -2.4 766,051 + PGA1_c07420 0.34 +0.7 766,124 + PGA1_c07420 0.40 -0.7 766,151 - PGA1_c07420 0.42 -0.8 766,157 - PGA1_c07420 0.42 +1.2 766,194 - PGA1_c07420 0.45 -2.8 766,222 + PGA1_c07420 0.47 -2.1 766,250 - PGA1_c07420 0.50 +0.8 766,255 - PGA1_c07420 0.50 -1.5 766,265 + PGA1_c07420 0.51 -0.3 766,314 + PGA1_c07420 0.55 -1.1 766,374 - PGA1_c07420 0.60 -0.8 766,387 + PGA1_c07420 0.61 +0.6 766,405 - PGA1_c07420 0.62 +2.1 766,408 + PGA1_c07420 0.62 +0.3 766,408 + PGA1_c07420 0.62 -3.1 766,408 + PGA1_c07420 0.62 +0.5 766,416 - PGA1_c07420 0.63 -0.8 766,416 - PGA1_c07420 0.63 -1.7 766,416 - PGA1_c07420 0.63 +2.4 766,423 + PGA1_c07420 0.63 +0.8 766,435 + PGA1_c07420 0.64 -0.8 766,443 - PGA1_c07420 0.65 +0.3 766,459 + PGA1_c07420 0.66 -0.3 766,466 + PGA1_c07420 0.67 -1.1 766,467 + PGA1_c07420 0.67 +1.2 766,467 + PGA1_c07420 0.67 -2.0 766,467 + PGA1_c07420 0.67 -1.5 766,467 + PGA1_c07420 0.67 +0.3 766,467 + PGA1_c07420 0.67 +0.6 766,467 + PGA1_c07420 0.67 +0.5 766,467 + PGA1_c07420 0.67 -1.2 766,467 + PGA1_c07420 0.67 -1.3 766,467 + PGA1_c07420 0.67 -0.0 766,474 - PGA1_c07420 0.68 +1.9 766,475 - PGA1_c07420 0.68 -2.9 766,475 - PGA1_c07420 0.68 -0.1 766,475 - PGA1_c07420 0.68 -0.4 766,475 - PGA1_c07420 0.68 -0.8 766,475 - PGA1_c07420 0.68 +1.1 766,475 - PGA1_c07420 0.68 +0.8
Or see this region's nucleotide sequence