Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07310

Experiment: m.b. nitrite 8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07300 and PGA1_c07310 are separated by 62 nucleotidesPGA1_c07310 and PGA1_c07320 are separated by 1 nucleotidesPGA1_c07320 and PGA1_c07330 are separated by 58 nucleotides PGA1_c07300: PGA1_c07300 - Inositol transport system sugar-binding protein (from data), at 751,753 to 752,703 _c07300 PGA1_c07310: PGA1_c07310 - Inositol transport system permease protein (from data), at 752,766 to 753,887 _c07310 PGA1_c07320: PGA1_c07320 - Inositol transport system ATP-binding protein (from data), at 753,889 to 754,674 _c07320 PGA1_c07330: PGA1_c07330 - beta-galactosidase 1, at 754,733 to 756,652 _c07330 Position (kb) 752 753 754Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 751.812 kb on + strandat 751.904 kb on + strand, within PGA1_c07300at 751.934 kb on - strand, within PGA1_c07300at 751.939 kb on - strand, within PGA1_c07300at 751.947 kb on + strand, within PGA1_c07300at 752.003 kb on - strand, within PGA1_c07300at 752.040 kb on - strand, within PGA1_c07300at 752.045 kb on + strand, within PGA1_c07300at 752.074 kb on + strand, within PGA1_c07300at 752.074 kb on + strand, within PGA1_c07300at 752.074 kb on + strand, within PGA1_c07300at 752.095 kb on - strand, within PGA1_c07300at 752.117 kb on + strand, within PGA1_c07300at 752.122 kb on + strand, within PGA1_c07300at 752.148 kb on + strand, within PGA1_c07300at 752.156 kb on - strand, within PGA1_c07300at 752.171 kb on - strand, within PGA1_c07300at 752.190 kb on + strand, within PGA1_c07300at 752.239 kb on - strand, within PGA1_c07300at 752.277 kb on + strand, within PGA1_c07300at 752.327 kb on - strand, within PGA1_c07300at 752.390 kb on - strand, within PGA1_c07300at 752.413 kb on - strand, within PGA1_c07300at 752.425 kb on + strand, within PGA1_c07300at 752.425 kb on + strand, within PGA1_c07300at 752.425 kb on + strand, within PGA1_c07300at 752.426 kb on + strand, within PGA1_c07300at 752.434 kb on - strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.491 kb on - strand, within PGA1_c07300at 752.491 kb on - strand, within PGA1_c07300at 752.491 kb on - strand, within PGA1_c07300at 752.513 kb on - strand, within PGA1_c07300at 752.527 kb on + strand, within PGA1_c07300at 752.532 kb on + strand, within PGA1_c07300at 752.592 kb on - strand, within PGA1_c07300at 752.628 kb on + strandat 752.633 kb on + strandat 752.665 kb on - strandat 752.689 kb on + strandat 752.697 kb on - strandat 752.697 kb on - strandat 752.710 kb on + strandat 752.761 kb on + strandat 752.776 kb on - strandat 752.776 kb on - strandat 752.812 kb on - strandat 752.832 kb on + strandat 752.832 kb on + strandat 752.832 kb on + strandat 752.861 kb on + strandat 752.862 kb on + strandat 752.877 kb on - strandat 752.877 kb on - strandat 752.916 kb on + strand, within PGA1_c07310at 752.916 kb on + strand, within PGA1_c07310at 752.918 kb on + strand, within PGA1_c07310at 752.918 kb on + strand, within PGA1_c07310at 752.924 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.979 kb on + strand, within PGA1_c07310at 753.004 kb on - strand, within PGA1_c07310at 753.070 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.080 kb on + strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.122 kb on + strand, within PGA1_c07310at 753.137 kb on - strand, within PGA1_c07310at 753.168 kb on + strand, within PGA1_c07310at 753.168 kb on + strand, within PGA1_c07310at 753.168 kb on + strand, within PGA1_c07310at 753.176 kb on - strand, within PGA1_c07310at 753.176 kb on - strand, within PGA1_c07310at 753.189 kb on + strand, within PGA1_c07310at 753.192 kb on - strand, within PGA1_c07310at 753.210 kb on - strand, within PGA1_c07310at 753.280 kb on - strand, within PGA1_c07310at 753.288 kb on + strand, within PGA1_c07310at 753.316 kb on - strand, within PGA1_c07310at 753.331 kb on + strand, within PGA1_c07310at 753.364 kb on - strand, within PGA1_c07310at 753.404 kb on + strand, within PGA1_c07310at 753.412 kb on - strand, within PGA1_c07310at 753.433 kb on + strand, within PGA1_c07310at 753.441 kb on - strand, within PGA1_c07310at 753.441 kb on - strand, within PGA1_c07310at 753.515 kb on + strand, within PGA1_c07310at 753.515 kb on + strand, within PGA1_c07310at 753.515 kb on + strand, within PGA1_c07310at 753.532 kb on + strand, within PGA1_c07310at 753.540 kb on - strand, within PGA1_c07310at 753.540 kb on - strand, within PGA1_c07310at 753.543 kb on + strand, within PGA1_c07310at 753.551 kb on - strand, within PGA1_c07310at 753.551 kb on - strand, within PGA1_c07310at 753.551 kb on - strand, within PGA1_c07310at 753.592 kb on - strand, within PGA1_c07310at 753.596 kb on + strand, within PGA1_c07310at 753.699 kb on + strand, within PGA1_c07310at 753.699 kb on + strand, within PGA1_c07310at 753.723 kb on + strand, within PGA1_c07310at 753.723 kb on + strand, within PGA1_c07310at 753.833 kb on - strandat 753.866 kb on + strandat 753.891 kb on + strandat 753.899 kb on - strandat 753.904 kb on + strandat 753.912 kb on - strandat 753.976 kb on - strand, within PGA1_c07320at 754.026 kb on + strand, within PGA1_c07320at 754.043 kb on - strand, within PGA1_c07320at 754.231 kb on - strand, within PGA1_c07320at 754.281 kb on - strand, within PGA1_c07320at 754.284 kb on - strand, within PGA1_c07320at 754.295 kb on + strand, within PGA1_c07320at 754.313 kb on - strand, within PGA1_c07320at 754.318 kb on - strand, within PGA1_c07320at 754.355 kb on - strand, within PGA1_c07320at 754.393 kb on - strand, within PGA1_c07320at 754.425 kb on + strand, within PGA1_c07320at 754.447 kb on - strand, within PGA1_c07320at 754.479 kb on + strand, within PGA1_c07320at 754.502 kb on + strand, within PGA1_c07320at 754.546 kb on + strand, within PGA1_c07320at 754.546 kb on + strand, within PGA1_c07320at 754.565 kb on - strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.571 kb on + strand, within PGA1_c07320at 754.574 kb on - strand, within PGA1_c07320at 754.598 kb on - strandat 754.664 kb on - strandat 754.716 kb on - strandat 754.754 kb on + strandat 754.857 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM
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751,812 + -0.6
751,904 + PGA1_c07300 0.16 -2.6
751,934 - PGA1_c07300 0.19 +1.5
751,939 - PGA1_c07300 0.20 -1.2
751,947 + PGA1_c07300 0.20 -1.2
752,003 - PGA1_c07300 0.26 +0.1
752,040 - PGA1_c07300 0.30 -3.2
752,045 + PGA1_c07300 0.31 -0.6
752,074 + PGA1_c07300 0.34 -0.3
752,074 + PGA1_c07300 0.34 -1.8
752,074 + PGA1_c07300 0.34 +0.9
752,095 - PGA1_c07300 0.36 +0.2
752,117 + PGA1_c07300 0.38 +0.1
752,122 + PGA1_c07300 0.39 -1.7
752,148 + PGA1_c07300 0.42 +0.8
752,156 - PGA1_c07300 0.42 +0.1
752,171 - PGA1_c07300 0.44 +0.1
752,190 + PGA1_c07300 0.46 -1.1
752,239 - PGA1_c07300 0.51 +0.5
752,277 + PGA1_c07300 0.55 +0.2
752,327 - PGA1_c07300 0.60 -1.4
752,390 - PGA1_c07300 0.67 -1.1
752,413 - PGA1_c07300 0.69 +0.0
752,425 + PGA1_c07300 0.71 -0.1
752,425 + PGA1_c07300 0.71 +1.4
752,425 + PGA1_c07300 0.71 -0.1
752,426 + PGA1_c07300 0.71 +0.3
752,434 - PGA1_c07300 0.72 -3.9
752,483 + PGA1_c07300 0.77 +1.3
752,483 + PGA1_c07300 0.77 -0.6
752,483 + PGA1_c07300 0.77 -1.3
752,483 + PGA1_c07300 0.77 -2.3
752,483 + PGA1_c07300 0.77 -0.4
752,483 + PGA1_c07300 0.77 +0.9
752,491 - PGA1_c07300 0.78 +0.3
752,491 - PGA1_c07300 0.78 +0.1
752,491 - PGA1_c07300 0.78 +0.7
752,513 - PGA1_c07300 0.80 -1.9
752,527 + PGA1_c07300 0.81 +0.5
752,532 + PGA1_c07300 0.82 +0.2
752,592 - PGA1_c07300 0.88 +0.9
752,628 + +1.4
752,633 + -0.4
752,665 - +0.2
752,689 + -0.8
752,697 - -1.5
752,697 - +2.5
752,710 + +1.5
752,761 + -2.5
752,776 - +0.4
752,776 - +0.0
752,812 - -1.6
752,832 + +3.1
752,832 + -0.2
752,832 + -0.9
752,861 + +0.5
752,862 + -0.8
752,877 - +0.3
752,877 - -2.4
752,916 + PGA1_c07310 0.13 +0.3
752,916 + PGA1_c07310 0.13 +0.0
752,918 + PGA1_c07310 0.14 -1.7
752,918 + PGA1_c07310 0.14 -1.2
752,924 - PGA1_c07310 0.14 -0.1
752,926 - PGA1_c07310 0.14 +0.8
752,926 - PGA1_c07310 0.14 +0.5
752,926 - PGA1_c07310 0.14 -1.9
752,926 - PGA1_c07310 0.14 -3.6
752,979 + PGA1_c07310 0.19 +2.0
753,004 - PGA1_c07310 0.21 -1.4
753,070 + PGA1_c07310 0.27 -0.1
753,075 + PGA1_c07310 0.28 -1.8
753,075 + PGA1_c07310 0.28 -0.5
753,075 + PGA1_c07310 0.28 -1.3
753,075 + PGA1_c07310 0.28 -2.9
753,075 + PGA1_c07310 0.28 -0.7
753,075 + PGA1_c07310 0.28 +1.0
753,080 + PGA1_c07310 0.28 -0.7
753,083 - PGA1_c07310 0.28 -0.8
753,083 - PGA1_c07310 0.28 -0.5
753,083 - PGA1_c07310 0.28 -1.3
753,083 - PGA1_c07310 0.28 -0.1
753,083 - PGA1_c07310 0.28 -0.8
753,083 - PGA1_c07310 0.28 -0.8
753,083 - PGA1_c07310 0.28 -2.3
753,083 - PGA1_c07310 0.28 -3.6
753,122 + PGA1_c07310 0.32 -3.1
753,137 - PGA1_c07310 0.33 -2.3
753,168 + PGA1_c07310 0.36 -0.2
753,168 + PGA1_c07310 0.36 +1.1
753,168 + PGA1_c07310 0.36 +0.7
753,176 - PGA1_c07310 0.37 -1.9
753,176 - PGA1_c07310 0.37 -0.5
753,189 + PGA1_c07310 0.38 +0.4
753,192 - PGA1_c07310 0.38 -2.3
753,210 - PGA1_c07310 0.40 +0.2
753,280 - PGA1_c07310 0.46 +1.7
753,288 + PGA1_c07310 0.47 -0.1
753,316 - PGA1_c07310 0.49 -2.2
753,331 + PGA1_c07310 0.50 +0.8
753,364 - PGA1_c07310 0.53 -0.1
753,404 + PGA1_c07310 0.57 +0.1
753,412 - PGA1_c07310 0.58 -1.9
753,433 + PGA1_c07310 0.59 -0.1
753,441 - PGA1_c07310 0.60 +0.8
753,441 - PGA1_c07310 0.60 +1.4
753,515 + PGA1_c07310 0.67 +0.0
753,515 + PGA1_c07310 0.67 +0.4
753,515 + PGA1_c07310 0.67 -3.2
753,532 + PGA1_c07310 0.68 -1.0
753,540 - PGA1_c07310 0.69 +0.3
753,540 - PGA1_c07310 0.69 -0.6
753,543 + PGA1_c07310 0.69 -1.9
753,551 - PGA1_c07310 0.70 -0.5
753,551 - PGA1_c07310 0.70 +0.1
753,551 - PGA1_c07310 0.70 -2.4
753,592 - PGA1_c07310 0.74 +0.7
753,596 + PGA1_c07310 0.74 +0.5
753,699 + PGA1_c07310 0.83 -0.3
753,699 + PGA1_c07310 0.83 +0.8
753,723 + PGA1_c07310 0.85 -1.3
753,723 + PGA1_c07310 0.85 +0.0
753,833 - +0.7
753,866 + -0.8
753,891 + +0.6
753,899 - -1.8
753,904 + +0.9
753,912 - +0.2
753,976 - PGA1_c07320 0.11 +0.3
754,026 + PGA1_c07320 0.17 +0.6
754,043 - PGA1_c07320 0.20 +0.9
754,231 - PGA1_c07320 0.44 -0.5
754,281 - PGA1_c07320 0.50 +0.0
754,284 - PGA1_c07320 0.50 -0.2
754,295 + PGA1_c07320 0.52 -1.1
754,313 - PGA1_c07320 0.54 -0.5
754,318 - PGA1_c07320 0.55 +0.4
754,355 - PGA1_c07320 0.59 +0.9
754,393 - PGA1_c07320 0.64 -0.3
754,425 + PGA1_c07320 0.68 -2.4
754,447 - PGA1_c07320 0.71 +0.7
754,479 + PGA1_c07320 0.75 -2.6
754,502 + PGA1_c07320 0.78 -0.2
754,546 + PGA1_c07320 0.84 +0.5
754,546 + PGA1_c07320 0.84 -1.9
754,565 - PGA1_c07320 0.86 +0.5
754,566 + PGA1_c07320 0.86 +0.1
754,566 + PGA1_c07320 0.86 -0.6
754,566 + PGA1_c07320 0.86 -1.7
754,566 + PGA1_c07320 0.86 +2.1
754,571 + PGA1_c07320 0.87 +1.7
754,574 - PGA1_c07320 0.87 +0.0
754,598 - -2.6
754,664 - +0.6
754,716 - -1.1
754,754 + -0.9
754,857 + -1.5

Or see this region's nucleotide sequence