Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07210 and PGA1_c07220 overlap by 7 nucleotides PGA1_c07220 and PGA1_c07230 overlap by 4 nucleotides PGA1_c07230 and PGA1_c07240 are separated by 12 nucleotides
PGA1_c07210: PGA1_c07210 - inositol 2-dehydrogenase IdhA, at 741,603 to 742,589
_c07210
PGA1_c07220: PGA1_c07220 - 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) (from data) , at 742,583 to 743,422
_c07220
PGA1_c07230: PGA1_c07230 - 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) , at 743,419 to 744,276
_c07230
PGA1_c07240: PGA1_c07240 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) (from data) , at 744,289 to 745,281
_c07240
Position (kb)
743
744
745 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 742.424 kb on + strand, within PGA1_c07210 at 742.427 kb on - strand, within PGA1_c07210 at 742.477 kb on + strand, within PGA1_c07210 at 742.540 kb on + strand at 742.620 kb on - strand at 742.663 kb on + strand at 742.663 kb on + strand at 742.671 kb on - strand, within PGA1_c07220 at 742.738 kb on - strand, within PGA1_c07220 at 742.790 kb on - strand, within PGA1_c07220 at 742.842 kb on - strand, within PGA1_c07220 at 742.892 kb on - strand, within PGA1_c07220 at 743.023 kb on + strand, within PGA1_c07220 at 743.079 kb on + strand, within PGA1_c07220 at 743.109 kb on + strand, within PGA1_c07220 at 743.127 kb on - strand, within PGA1_c07220 at 743.133 kb on - strand, within PGA1_c07220 at 743.156 kb on + strand, within PGA1_c07220 at 743.156 kb on + strand, within PGA1_c07220 at 743.156 kb on + strand, within PGA1_c07220 at 743.156 kb on + strand, within PGA1_c07220 at 743.156 kb on + strand, within PGA1_c07220 at 743.164 kb on - strand, within PGA1_c07220 at 743.164 kb on - strand, within PGA1_c07220 at 743.164 kb on - strand, within PGA1_c07220 at 743.181 kb on + strand, within PGA1_c07220 at 743.192 kb on + strand, within PGA1_c07220 at 743.262 kb on + strand, within PGA1_c07220 at 743.267 kb on + strand, within PGA1_c07220 at 743.270 kb on - strand, within PGA1_c07220 at 743.271 kb on + strand, within PGA1_c07220 at 743.340 kb on - strand at 743.373 kb on + strand at 743.467 kb on - strand at 743.511 kb on + strand, within PGA1_c07230 at 743.512 kb on + strand, within PGA1_c07230 at 743.519 kb on - strand, within PGA1_c07230 at 743.564 kb on + strand, within PGA1_c07230 at 743.572 kb on - strand, within PGA1_c07230 at 743.572 kb on - strand, within PGA1_c07230 at 743.614 kb on - strand, within PGA1_c07230 at 743.630 kb on + strand, within PGA1_c07230 at 743.630 kb on + strand, within PGA1_c07230 at 743.666 kb on - strand, within PGA1_c07230 at 743.780 kb on + strand, within PGA1_c07230 at 743.795 kb on + strand, within PGA1_c07230 at 743.805 kb on + strand, within PGA1_c07230 at 743.876 kb on + strand, within PGA1_c07230 at 743.884 kb on - strand, within PGA1_c07230 at 743.884 kb on - strand, within PGA1_c07230 at 743.886 kb on + strand, within PGA1_c07230 at 743.894 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.936 kb on - strand, within PGA1_c07230 at 744.035 kb on + strand, within PGA1_c07230 at 744.078 kb on + strand, within PGA1_c07230 at 744.083 kb on + strand, within PGA1_c07230 at 744.088 kb on + strand, within PGA1_c07230 at 744.096 kb on - strand, within PGA1_c07230 at 744.134 kb on + strand, within PGA1_c07230 at 744.139 kb on + strand, within PGA1_c07230 at 744.162 kb on + strand, within PGA1_c07230 at 744.170 kb on - strand, within PGA1_c07230 at 744.177 kb on - strand, within PGA1_c07230 at 744.184 kb on - strand, within PGA1_c07230 at 744.186 kb on + strand, within PGA1_c07230 at 744.194 kb on - strand at 744.310 kb on - strand at 744.352 kb on + strand at 744.376 kb on - strand at 744.442 kb on - strand, within PGA1_c07240 at 744.571 kb on + strand, within PGA1_c07240 at 744.627 kb on - strand, within PGA1_c07240 at 744.723 kb on - strand, within PGA1_c07240 at 744.733 kb on + strand, within PGA1_c07240 at 744.733 kb on + strand, within PGA1_c07240 at 744.740 kb on + strand, within PGA1_c07240 at 744.741 kb on - strand, within PGA1_c07240 at 744.789 kb on + strand, within PGA1_c07240 at 744.792 kb on - strand, within PGA1_c07240 at 744.792 kb on - strand, within PGA1_c07240 at 744.827 kb on + strand, within PGA1_c07240 at 744.853 kb on - strand, within PGA1_c07240 at 744.862 kb on + strand, within PGA1_c07240 at 744.870 kb on - strand, within PGA1_c07240 at 744.889 kb on - strand, within PGA1_c07240 at 744.944 kb on - strand, within PGA1_c07240 at 744.969 kb on + strand, within PGA1_c07240 at 745.017 kb on + strand, within PGA1_c07240 at 745.049 kb on - strand, within PGA1_c07240 at 745.049 kb on - strand, within PGA1_c07240 at 745.051 kb on + strand, within PGA1_c07240 at 745.079 kb on + strand, within PGA1_c07240 at 745.089 kb on + strand, within PGA1_c07240 at 745.206 kb on + strand at 745.206 kb on + strand at 745.206 kb on + strand at 745.214 kb on - strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.259 kb on - strand at 745.259 kb on - strand at 745.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 742,424 + PGA1_c07210 0.83 -2.6 742,427 - PGA1_c07210 0.83 -0.9 742,477 + PGA1_c07210 0.89 +0.9 742,540 + -1.0 742,620 - +0.7 742,663 + +1.8 742,663 + +0.3 742,671 - PGA1_c07220 0.10 -0.4 742,738 - PGA1_c07220 0.18 +0.1 742,790 - PGA1_c07220 0.25 -0.6 742,842 - PGA1_c07220 0.31 +2.3 742,892 - PGA1_c07220 0.37 +0.8 743,023 + PGA1_c07220 0.52 +0.4 743,079 + PGA1_c07220 0.59 -0.4 743,109 + PGA1_c07220 0.63 -0.9 743,127 - PGA1_c07220 0.65 +1.1 743,133 - PGA1_c07220 0.65 +1.3 743,156 + PGA1_c07220 0.68 +0.4 743,156 + PGA1_c07220 0.68 -0.4 743,156 + PGA1_c07220 0.68 +0.2 743,156 + PGA1_c07220 0.68 +1.3 743,156 + PGA1_c07220 0.68 -2.3 743,164 - PGA1_c07220 0.69 +0.6 743,164 - PGA1_c07220 0.69 +1.1 743,164 - PGA1_c07220 0.69 +0.6 743,181 + PGA1_c07220 0.71 -1.8 743,192 + PGA1_c07220 0.72 -1.5 743,262 + PGA1_c07220 0.81 +1.2 743,267 + PGA1_c07220 0.81 -0.5 743,270 - PGA1_c07220 0.82 -0.3 743,271 + PGA1_c07220 0.82 +0.3 743,340 - -1.5 743,373 + -1.1 743,467 - +0.4 743,511 + PGA1_c07230 0.11 -2.4 743,512 + PGA1_c07230 0.11 +0.2 743,519 - PGA1_c07230 0.12 -1.7 743,564 + PGA1_c07230 0.17 -1.5 743,572 - PGA1_c07230 0.18 -2.7 743,572 - PGA1_c07230 0.18 +1.5 743,614 - PGA1_c07230 0.23 -0.4 743,630 + PGA1_c07230 0.25 -1.3 743,630 + PGA1_c07230 0.25 -1.0 743,666 - PGA1_c07230 0.29 -0.6 743,780 + PGA1_c07230 0.42 -1.2 743,795 + PGA1_c07230 0.44 +0.2 743,805 + PGA1_c07230 0.45 -0.5 743,876 + PGA1_c07230 0.53 -0.8 743,884 - PGA1_c07230 0.54 +0.2 743,884 - PGA1_c07230 0.54 -0.5 743,886 + PGA1_c07230 0.54 -2.4 743,894 - PGA1_c07230 0.55 -2.2 743,904 - PGA1_c07230 0.57 -2.5 743,904 - PGA1_c07230 0.57 -1.8 743,904 - PGA1_c07230 0.57 -1.2 743,904 - PGA1_c07230 0.57 -1.3 743,904 - PGA1_c07230 0.57 -0.9 743,936 - PGA1_c07230 0.60 +0.8 744,035 + PGA1_c07230 0.72 -2.4 744,078 + PGA1_c07230 0.77 +0.6 744,083 + PGA1_c07230 0.77 -2.7 744,088 + PGA1_c07230 0.78 -0.3 744,096 - PGA1_c07230 0.79 -2.4 744,134 + PGA1_c07230 0.83 -3.2 744,139 + PGA1_c07230 0.84 -1.0 744,162 + PGA1_c07230 0.87 -1.1 744,170 - PGA1_c07230 0.88 +0.8 744,177 - PGA1_c07230 0.88 -1.9 744,184 - PGA1_c07230 0.89 -1.1 744,186 + PGA1_c07230 0.89 -1.7 744,194 - +0.7 744,310 - -0.1 744,352 + -0.9 744,376 - -1.4 744,442 - PGA1_c07240 0.15 -1.1 744,571 + PGA1_c07240 0.28 +0.2 744,627 - PGA1_c07240 0.34 -3.4 744,723 - PGA1_c07240 0.44 -2.1 744,733 + PGA1_c07240 0.45 -0.1 744,733 + PGA1_c07240 0.45 -0.7 744,740 + PGA1_c07240 0.45 -1.1 744,741 - PGA1_c07240 0.46 +0.5 744,789 + PGA1_c07240 0.50 -0.2 744,792 - PGA1_c07240 0.51 -1.5 744,792 - PGA1_c07240 0.51 +2.9 744,827 + PGA1_c07240 0.54 -1.4 744,853 - PGA1_c07240 0.57 -2.4 744,862 + PGA1_c07240 0.58 -2.1 744,870 - PGA1_c07240 0.59 -1.7 744,889 - PGA1_c07240 0.60 -0.9 744,944 - PGA1_c07240 0.66 +1.1 744,969 + PGA1_c07240 0.68 +0.4 745,017 + PGA1_c07240 0.73 -1.8 745,049 - PGA1_c07240 0.77 -0.8 745,049 - PGA1_c07240 0.77 -0.4 745,051 + PGA1_c07240 0.77 -1.7 745,079 + PGA1_c07240 0.80 +0.9 745,089 + PGA1_c07240 0.81 -2.7 745,206 + +0.0 745,206 + -2.9 745,206 + -2.7 745,214 - -1.3 745,251 + -3.1 745,251 + +1.6 745,251 + +0.5 745,251 + -2.5 745,251 + -0.8 745,259 - -2.2 745,259 - -0.2 745,259 - -0.8
Or see this region's nucleotide sequence