Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07140 and PGA1_c07150 overlap by 4 nucleotides PGA1_c07150 and PGA1_c07160 are separated by 19 nucleotides PGA1_c07160 and PGA1_c07170 are separated by 23 nucleotides PGA1_c07170 and PGA1_c07180 are separated by 144 nucleotides
PGA1_c07140: PGA1_c07140 - putative methylamine utilization protein MauG, at 733,722 to 734,975
_c07140
PGA1_c07150: PGA1_c07150 - Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems, at 734,972 to 735,772
_c07150
PGA1_c07160: PGA1_c07160 - FOG: WD40 repeat, at 735,792 to 737,102
_c07160
PGA1_c07170: PGA1_c07170 - acetate operon repressor-like protein, at 737,126 to 737,938
_c07170
PGA1_c07180: PGA1_c07180 - 2-hydroxy-3-oxopropionate reductase-like protein, at 738,083 to 739,048
_c07180
Position (kb) 735
736
737
738 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 734.802 kb on + strand, within PGA1_c07140 at 734.802 kb on + strand, within PGA1_c07140 at 734.802 kb on + strand, within PGA1_c07140 at 734.810 kb on - strand, within PGA1_c07140 at 734.810 kb on - strand, within PGA1_c07140 at 734.824 kb on - strand, within PGA1_c07140 at 734.860 kb on + strand at 734.865 kb on + strand at 734.878 kb on - strand at 734.937 kb on - strand at 734.966 kb on - strand at 735.037 kb on + strand at 735.041 kb on - strand at 735.045 kb on - strand at 735.068 kb on + strand, within PGA1_c07150 at 735.080 kb on - strand, within PGA1_c07150 at 735.089 kb on - strand, within PGA1_c07150 at 735.128 kb on + strand, within PGA1_c07150 at 735.129 kb on + strand, within PGA1_c07150 at 735.130 kb on - strand, within PGA1_c07150 at 735.136 kb on - strand, within PGA1_c07150 at 735.139 kb on + strand, within PGA1_c07150 at 735.139 kb on + strand, within PGA1_c07150 at 735.142 kb on - strand, within PGA1_c07150 at 735.147 kb on - strand, within PGA1_c07150 at 735.147 kb on - strand, within PGA1_c07150 at 735.147 kb on - strand, within PGA1_c07150 at 735.185 kb on + strand, within PGA1_c07150 at 735.185 kb on + strand, within PGA1_c07150 at 735.190 kb on + strand, within PGA1_c07150 at 735.238 kb on - strand, within PGA1_c07150 at 735.257 kb on + strand, within PGA1_c07150 at 735.265 kb on - strand, within PGA1_c07150 at 735.321 kb on + strand, within PGA1_c07150 at 735.328 kb on + strand, within PGA1_c07150 at 735.328 kb on + strand, within PGA1_c07150 at 735.376 kb on - strand, within PGA1_c07150 at 735.380 kb on + strand, within PGA1_c07150 at 735.406 kb on - strand, within PGA1_c07150 at 735.498 kb on + strand, within PGA1_c07150 at 735.517 kb on - strand, within PGA1_c07150 at 735.517 kb on - strand, within PGA1_c07150 at 735.517 kb on - strand, within PGA1_c07150 at 735.545 kb on - strand, within PGA1_c07150 at 735.580 kb on - strand, within PGA1_c07150 at 735.587 kb on + strand, within PGA1_c07150 at 735.587 kb on + strand, within PGA1_c07150 at 735.587 kb on + strand, within PGA1_c07150 at 735.644 kb on + strand, within PGA1_c07150 at 735.655 kb on + strand, within PGA1_c07150 at 735.657 kb on + strand, within PGA1_c07150 at 735.745 kb on - strand at 735.745 kb on - strand at 735.804 kb on - strand at 735.825 kb on + strand at 735.840 kb on + strand at 735.840 kb on + strand at 735.840 kb on + strand at 735.840 kb on + strand at 735.840 kb on + strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.853 kb on - strand at 735.879 kb on + strand at 735.884 kb on + strand at 735.884 kb on + strand at 735.900 kb on + strand at 735.907 kb on + strand at 735.907 kb on + strand at 735.908 kb on - strand at 735.910 kb on + strand at 735.910 kb on + strand at 735.931 kb on - strand, within PGA1_c07160 at 735.961 kb on + strand, within PGA1_c07160 at 735.996 kb on - strand, within PGA1_c07160 at 736.014 kb on - strand, within PGA1_c07160 at 736.046 kb on - strand, within PGA1_c07160 at 736.048 kb on + strand, within PGA1_c07160 at 736.056 kb on - strand, within PGA1_c07160 at 736.066 kb on - strand, within PGA1_c07160 at 736.076 kb on + strand, within PGA1_c07160 at 736.159 kb on - strand, within PGA1_c07160 at 736.168 kb on - strand, within PGA1_c07160 at 736.168 kb on - strand, within PGA1_c07160 at 736.224 kb on - strand, within PGA1_c07160 at 736.240 kb on - strand, within PGA1_c07160 at 736.240 kb on - strand, within PGA1_c07160 at 736.342 kb on - strand, within PGA1_c07160 at 736.342 kb on - strand, within PGA1_c07160 at 736.359 kb on - strand, within PGA1_c07160 at 736.360 kb on + strand, within PGA1_c07160 at 736.365 kb on + strand, within PGA1_c07160 at 736.418 kb on + strand, within PGA1_c07160 at 736.495 kb on + strand, within PGA1_c07160 at 736.502 kb on - strand, within PGA1_c07160 at 736.534 kb on + strand, within PGA1_c07160 at 736.559 kb on + strand, within PGA1_c07160 at 736.601 kb on - strand, within PGA1_c07160 at 736.734 kb on - strand, within PGA1_c07160 at 736.736 kb on + strand, within PGA1_c07160 at 736.736 kb on + strand, within PGA1_c07160 at 736.801 kb on + strand, within PGA1_c07160 at 736.817 kb on + strand, within PGA1_c07160 at 736.822 kb on + strand, within PGA1_c07160 at 736.876 kb on - strand, within PGA1_c07160 at 736.880 kb on - strand, within PGA1_c07160 at 736.916 kb on - strand, within PGA1_c07160 at 736.924 kb on + strand, within PGA1_c07160 at 736.932 kb on - strand, within PGA1_c07160 at 736.955 kb on + strand, within PGA1_c07160 at 736.963 kb on + strand, within PGA1_c07160 at 736.991 kb on + strand at 737.030 kb on - strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.053 kb on + strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.061 kb on - strand at 737.097 kb on + strand at 737.142 kb on + strand at 737.142 kb on + strand at 737.150 kb on - strand at 737.282 kb on - strand, within PGA1_c07170 at 737.283 kb on - strand, within PGA1_c07170 at 737.327 kb on - strand, within PGA1_c07170 at 737.385 kb on - strand, within PGA1_c07170 at 737.398 kb on - strand, within PGA1_c07170 at 737.404 kb on - strand, within PGA1_c07170 at 737.430 kb on + strand, within PGA1_c07170 at 737.445 kb on + strand, within PGA1_c07170 at 737.445 kb on + strand, within PGA1_c07170 at 737.508 kb on - strand, within PGA1_c07170 at 737.543 kb on + strand, within PGA1_c07170 at 737.543 kb on + strand, within PGA1_c07170 at 737.551 kb on - strand, within PGA1_c07170 at 737.551 kb on - strand, within PGA1_c07170 at 737.551 kb on - strand, within PGA1_c07170 at 737.560 kb on + strand, within PGA1_c07170 at 737.560 kb on + strand, within PGA1_c07170 at 737.560 kb on + strand, within PGA1_c07170 at 737.560 kb on + strand, within PGA1_c07170 at 737.568 kb on - strand, within PGA1_c07170 at 737.568 kb on - strand, within PGA1_c07170 at 737.568 kb on - strand, within PGA1_c07170 at 737.574 kb on - strand, within PGA1_c07170 at 737.574 kb on - strand, within PGA1_c07170 at 737.576 kb on + strand, within PGA1_c07170 at 737.576 kb on + strand, within PGA1_c07170 at 737.584 kb on - strand, within PGA1_c07170 at 737.598 kb on + strand, within PGA1_c07170 at 737.598 kb on + strand, within PGA1_c07170 at 737.668 kb on + strand, within PGA1_c07170 at 737.671 kb on - strand, within PGA1_c07170 at 737.701 kb on - strand, within PGA1_c07170 at 737.701 kb on - strand, within PGA1_c07170 at 737.787 kb on + strand, within PGA1_c07170 at 737.810 kb on + strand, within PGA1_c07170 at 737.815 kb on + strand, within PGA1_c07170 at 737.823 kb on - strand, within PGA1_c07170 at 737.848 kb on + strand, within PGA1_c07170 at 737.866 kb on - strand at 737.898 kb on - strand at 738.004 kb on - strand at 738.007 kb on + strand at 738.012 kb on + strand at 738.012 kb on + strand at 738.012 kb on + strand at 738.012 kb on + strand at 738.012 kb on + strand at 738.020 kb on - strand at 738.020 kb on - strand at 738.041 kb on + strand at 738.041 kb on + strand at 738.055 kb on + strand at 738.063 kb on - strand at 738.088 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 734,802 + PGA1_c07140 0.86 -1.1 734,802 + PGA1_c07140 0.86 -0.1 734,802 + PGA1_c07140 0.86 +0.4 734,810 - PGA1_c07140 0.87 -2.6 734,810 - PGA1_c07140 0.87 -1.6 734,824 - PGA1_c07140 0.88 +1.3 734,860 + -1.1 734,865 + -0.4 734,878 - +1.9 734,937 - -0.1 734,966 - -2.2 735,037 + +0.8 735,041 - -3.4 735,045 - -1.7 735,068 + PGA1_c07150 0.12 -1.2 735,080 - PGA1_c07150 0.13 -3.1 735,089 - PGA1_c07150 0.15 -1.1 735,128 + PGA1_c07150 0.19 -2.8 735,129 + PGA1_c07150 0.20 +0.0 735,130 - PGA1_c07150 0.20 +0.1 735,136 - PGA1_c07150 0.20 +0.3 735,139 + PGA1_c07150 0.21 +0.1 735,139 + PGA1_c07150 0.21 +0.6 735,142 - PGA1_c07150 0.21 -0.2 735,147 - PGA1_c07150 0.22 +0.6 735,147 - PGA1_c07150 0.22 -2.0 735,147 - PGA1_c07150 0.22 -1.5 735,185 + PGA1_c07150 0.27 +0.4 735,185 + PGA1_c07150 0.27 +0.8 735,190 + PGA1_c07150 0.27 +1.0 735,238 - PGA1_c07150 0.33 +0.9 735,257 + PGA1_c07150 0.36 +0.4 735,265 - PGA1_c07150 0.37 +1.2 735,321 + PGA1_c07150 0.44 -1.3 735,328 + PGA1_c07150 0.44 +0.1 735,328 + PGA1_c07150 0.44 +1.9 735,376 - PGA1_c07150 0.50 +1.2 735,380 + PGA1_c07150 0.51 -2.6 735,406 - PGA1_c07150 0.54 -0.0 735,498 + PGA1_c07150 0.66 -1.4 735,517 - PGA1_c07150 0.68 +2.0 735,517 - PGA1_c07150 0.68 -2.8 735,517 - PGA1_c07150 0.68 -1.3 735,545 - PGA1_c07150 0.72 -0.3 735,580 - PGA1_c07150 0.76 -0.5 735,587 + PGA1_c07150 0.77 -1.1 735,587 + PGA1_c07150 0.77 -1.5 735,587 + PGA1_c07150 0.77 -0.8 735,644 + PGA1_c07150 0.84 +2.2 735,655 + PGA1_c07150 0.85 +0.6 735,657 + PGA1_c07150 0.86 +0.9 735,745 - +0.1 735,745 - +0.4 735,804 - -0.3 735,825 + -2.6 735,840 + +3.1 735,840 + -2.6 735,840 + -0.1 735,840 + +1.9 735,840 + +0.9 735,848 - -2.1 735,848 - -3.5 735,848 - -0.3 735,848 - +0.0 735,848 - +0.4 735,848 - +0.3 735,848 - +0.8 735,853 - -2.1 735,879 + +0.3 735,884 + -1.5 735,884 + +1.0 735,900 + -0.7 735,907 + -1.1 735,907 + -1.1 735,908 - -0.5 735,910 + -0.7 735,910 + -1.3 735,931 - PGA1_c07160 0.11 -0.3 735,961 + PGA1_c07160 0.13 -1.9 735,996 - PGA1_c07160 0.16 +2.1 736,014 - PGA1_c07160 0.17 -0.8 736,046 - PGA1_c07160 0.19 -1.0 736,048 + PGA1_c07160 0.20 -2.4 736,056 - PGA1_c07160 0.20 -0.7 736,066 - PGA1_c07160 0.21 -0.8 736,076 + PGA1_c07160 0.22 -2.1 736,159 - PGA1_c07160 0.28 -0.1 736,168 - PGA1_c07160 0.29 +0.9 736,168 - PGA1_c07160 0.29 -1.8 736,224 - PGA1_c07160 0.33 -0.1 736,240 - PGA1_c07160 0.34 -0.8 736,240 - PGA1_c07160 0.34 -1.5 736,342 - PGA1_c07160 0.42 -2.0 736,342 - PGA1_c07160 0.42 -0.5 736,359 - PGA1_c07160 0.43 -1.2 736,360 + PGA1_c07160 0.43 -1.7 736,365 + PGA1_c07160 0.44 -1.3 736,418 + PGA1_c07160 0.48 -2.7 736,495 + PGA1_c07160 0.54 +1.0 736,502 - PGA1_c07160 0.54 +0.8 736,534 + PGA1_c07160 0.57 -2.4 736,559 + PGA1_c07160 0.59 -2.2 736,601 - PGA1_c07160 0.62 +0.3 736,734 - PGA1_c07160 0.72 -0.1 736,736 + PGA1_c07160 0.72 -0.1 736,736 + PGA1_c07160 0.72 +0.3 736,801 + PGA1_c07160 0.77 -0.9 736,817 + PGA1_c07160 0.78 -1.0 736,822 + PGA1_c07160 0.79 -2.3 736,876 - PGA1_c07160 0.83 -1.1 736,880 - PGA1_c07160 0.83 -0.6 736,916 - PGA1_c07160 0.86 -3.7 736,924 + PGA1_c07160 0.86 -1.3 736,932 - PGA1_c07160 0.87 -0.4 736,955 + PGA1_c07160 0.89 +0.6 736,963 + PGA1_c07160 0.89 +1.0 736,991 + +1.0 737,030 - -1.7 737,053 + -0.4 737,053 + -0.3 737,053 + -0.5 737,053 + +1.6 737,053 + -3.0 737,053 + -0.2 737,053 + +0.4 737,053 + +0.5 737,053 + -2.1 737,053 + -1.0 737,053 + -0.9 737,053 + -0.4 737,053 + +0.4 737,053 + -2.5 737,053 + +0.9 737,053 + +0.1 737,053 + +0.1 737,053 + +0.1 737,053 + -2.0 737,053 + +0.5 737,053 + +1.7 737,061 - -0.8 737,061 - +1.2 737,061 - -1.5 737,061 - +1.1 737,061 - -2.9 737,061 - -3.8 737,061 - -1.1 737,061 - -2.6 737,061 - -1.3 737,097 + +1.3 737,142 + -2.1 737,142 + -2.7 737,150 - -0.3 737,282 - PGA1_c07170 0.19 +1.5 737,283 - PGA1_c07170 0.19 -0.7 737,327 - PGA1_c07170 0.25 -1.2 737,385 - PGA1_c07170 0.32 -2.2 737,398 - PGA1_c07170 0.33 -0.3 737,404 - PGA1_c07170 0.34 -2.1 737,430 + PGA1_c07170 0.37 -1.1 737,445 + PGA1_c07170 0.39 -0.7 737,445 + PGA1_c07170 0.39 +0.3 737,508 - PGA1_c07170 0.47 +0.2 737,543 + PGA1_c07170 0.51 +0.3 737,543 + PGA1_c07170 0.51 -1.8 737,551 - PGA1_c07170 0.52 -0.1 737,551 - PGA1_c07170 0.52 +0.1 737,551 - PGA1_c07170 0.52 -0.2 737,560 + PGA1_c07170 0.53 -0.6 737,560 + PGA1_c07170 0.53 -1.9 737,560 + PGA1_c07170 0.53 -0.5 737,560 + PGA1_c07170 0.53 -2.7 737,568 - PGA1_c07170 0.54 -0.5 737,568 - PGA1_c07170 0.54 +1.0 737,568 - PGA1_c07170 0.54 -1.1 737,574 - PGA1_c07170 0.55 +0.5 737,574 - PGA1_c07170 0.55 -0.2 737,576 + PGA1_c07170 0.55 +3.4 737,576 + PGA1_c07170 0.55 -1.9 737,584 - PGA1_c07170 0.56 -0.9 737,598 + PGA1_c07170 0.58 +1.2 737,598 + PGA1_c07170 0.58 +0.7 737,668 + PGA1_c07170 0.67 -0.2 737,671 - PGA1_c07170 0.67 -3.7 737,701 - PGA1_c07170 0.71 -0.7 737,701 - PGA1_c07170 0.71 -0.6 737,787 + PGA1_c07170 0.81 +1.1 737,810 + PGA1_c07170 0.84 -0.6 737,815 + PGA1_c07170 0.85 -0.0 737,823 - PGA1_c07170 0.86 +0.2 737,848 + PGA1_c07170 0.89 +0.8 737,866 - -3.2 737,898 - -1.2 738,004 - +0.3 738,007 + +0.0 738,012 + +0.1 738,012 + +0.2 738,012 + +0.7 738,012 + +1.1 738,012 + +0.8 738,020 - -2.9 738,020 - +1.0 738,041 + -1.3 738,041 + -1.5 738,055 + +0.7 738,063 - -0.4 738,088 + +0.4
Or see this region's nucleotide sequence