Strain Fitness in Marinobacter adhaerens HP15 around HP15_651

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_648 and HP15_649 overlap by 10 nucleotidesHP15_649 and HP15_650 overlap by 11 nucleotidesHP15_650 and HP15_651 overlap by 1 nucleotidesHP15_651 and HP15_652 are separated by 123 nucleotidesHP15_652 and HP15_653 are separated by 50 nucleotidesHP15_653 and HP15_654 overlap by 1 nucleotides HP15_648: HP15_648 - phage late control D, at 671,089 to 672,087 _648 HP15_649: HP15_649 - phage tail protein X, at 672,078 to 672,290 _649 HP15_650: HP15_650 - phage P2 GpU, at 672,280 to 672,672 _650 HP15_651: HP15_651 - protein putative phage tail tape measure protein-like protein, at 672,672 to 674,426 _651 HP15_652: HP15_652 - conserved hypothetical protein, at 674,550 to 674,834 _652 HP15_653: HP15_653 - phage major tail tube protein, at 674,885 to 675,391 _653 HP15_654: HP15_654 - major tail sheath protein, at 675,391 to 676,908 _654 Position (kb) 672 673 674 675Strain fitness (log2 ratio) -2 -1 0 1 2at 671.683 kb on - strand, within HP15_648at 671.685 kb on - strand, within HP15_648at 671.764 kb on + strand, within HP15_648at 671.811 kb on + strand, within HP15_648at 671.850 kb on + strand, within HP15_648at 671.917 kb on - strand, within HP15_648at 671.981 kb on - strand, within HP15_648at 672.097 kb on - strandat 672.122 kb on - strand, within HP15_649at 672.163 kb on - strand, within HP15_649at 672.242 kb on - strand, within HP15_649at 672.357 kb on - strand, within HP15_650at 672.392 kb on - strand, within HP15_650at 672.416 kb on + strand, within HP15_650at 672.416 kb on + strand, within HP15_650at 672.458 kb on + strand, within HP15_650at 672.458 kb on + strand, within HP15_650at 672.466 kb on - strand, within HP15_650at 672.546 kb on - strand, within HP15_650at 672.553 kb on + strand, within HP15_650at 672.558 kb on + strand, within HP15_650at 672.561 kb on - strand, within HP15_650at 672.561 kb on - strand, within HP15_650at 672.561 kb on - strand, within HP15_650at 672.576 kb on + strand, within HP15_650at 672.581 kb on - strand, within HP15_650at 672.610 kb on + strand, within HP15_650at 672.701 kb on + strandat 672.793 kb on + strandat 672.860 kb on - strand, within HP15_651at 672.877 kb on - strand, within HP15_651at 673.049 kb on - strand, within HP15_651at 673.139 kb on - strand, within HP15_651at 673.222 kb on + strand, within HP15_651at 673.335 kb on + strand, within HP15_651at 673.335 kb on + strand, within HP15_651at 673.520 kb on + strand, within HP15_651at 673.543 kb on - strand, within HP15_651at 673.601 kb on + strand, within HP15_651at 673.621 kb on - strand, within HP15_651at 673.651 kb on + strand, within HP15_651at 673.651 kb on + strand, within HP15_651at 673.849 kb on + strand, within HP15_651at 673.862 kb on - strand, within HP15_651at 673.880 kb on - strand, within HP15_651at 673.898 kb on - strand, within HP15_651at 673.917 kb on - strand, within HP15_651at 673.929 kb on + strand, within HP15_651at 673.933 kb on - strand, within HP15_651at 673.993 kb on - strand, within HP15_651at 674.225 kb on - strand, within HP15_651at 674.352 kb on + strandat 674.461 kb on - strandat 674.463 kb on + strandat 674.518 kb on + strandat 674.574 kb on + strandat 674.576 kb on + strandat 674.710 kb on - strand, within HP15_652at 674.741 kb on + strand, within HP15_652at 674.811 kb on + strandat 674.819 kb on - strandat 674.843 kb on - strandat 674.941 kb on + strand, within HP15_653at 675.027 kb on + strand, within HP15_653at 675.032 kb on + strand, within HP15_653at 675.054 kb on - strand, within HP15_653at 675.111 kb on - strand, within HP15_653at 675.139 kb on - strand, within HP15_653at 675.198 kb on + strand, within HP15_653at 675.250 kb on + strand, within HP15_653at 675.250 kb on + strand, within HP15_653at 675.250 kb on - strand, within HP15_653at 675.258 kb on - strand, within HP15_653at 675.258 kb on - strand, within HP15_653at 675.258 kb on - strand, within HP15_653at 675.309 kb on - strand, within HP15_653at 675.312 kb on + strand, within HP15_653at 675.333 kb on + strand, within HP15_653at 675.333 kb on + strand, within HP15_653at 675.341 kb on - strandat 675.341 kb on - strandat 675.366 kb on - strandat 675.366 kb on - strandat 675.366 kb on - strandat 675.366 kb on - strandat 675.376 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 5 mM
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671,683 - HP15_648 0.59 +0.3
671,685 - HP15_648 0.60 +0.3
671,764 + HP15_648 0.68 +0.5
671,811 + HP15_648 0.72 +0.9
671,850 + HP15_648 0.76 -0.4
671,917 - HP15_648 0.83 +0.8
671,981 - HP15_648 0.89 +0.8
672,097 - +0.7
672,122 - HP15_649 0.21 +0.1
672,163 - HP15_649 0.40 -0.9
672,242 - HP15_649 0.77 -0.8
672,357 - HP15_650 0.20 +0.5
672,392 - HP15_650 0.28 +2.1
672,416 + HP15_650 0.35 +1.8
672,416 + HP15_650 0.35 -1.8
672,458 + HP15_650 0.45 +1.0
672,458 + HP15_650 0.45 +0.2
672,466 - HP15_650 0.47 -0.2
672,546 - HP15_650 0.68 +1.4
672,553 + HP15_650 0.69 +0.0
672,558 + HP15_650 0.71 +0.8
672,561 - HP15_650 0.72 +0.7
672,561 - HP15_650 0.72 +0.1
672,561 - HP15_650 0.72 -0.4
672,576 + HP15_650 0.75 +1.1
672,581 - HP15_650 0.77 +0.2
672,610 + HP15_650 0.84 +0.5
672,701 + +0.9
672,793 + +0.4
672,860 - HP15_651 0.11 +0.8
672,877 - HP15_651 0.12 +0.8
673,049 - HP15_651 0.21 +1.2
673,139 - HP15_651 0.27 -0.1
673,222 + HP15_651 0.31 +0.8
673,335 + HP15_651 0.38 -0.1
673,335 + HP15_651 0.38 +0.5
673,520 + HP15_651 0.48 +1.1
673,543 - HP15_651 0.50 -0.3
673,601 + HP15_651 0.53 +0.7
673,621 - HP15_651 0.54 +0.4
673,651 + HP15_651 0.56 +0.4
673,651 + HP15_651 0.56 -0.7
673,849 + HP15_651 0.67 +1.3
673,862 - HP15_651 0.68 +1.2
673,880 - HP15_651 0.69 +0.9
673,898 - HP15_651 0.70 +0.4
673,917 - HP15_651 0.71 +0.4
673,929 + HP15_651 0.72 +0.7
673,933 - HP15_651 0.72 +0.4
673,993 - HP15_651 0.75 +1.4
674,225 - HP15_651 0.88 -0.1
674,352 + +0.9
674,461 - +1.3
674,463 + +0.6
674,518 + +0.4
674,574 + -0.2
674,576 + +0.5
674,710 - HP15_652 0.56 -1.7
674,741 + HP15_652 0.67 +0.8
674,811 + +0.6
674,819 - -0.3
674,843 - +0.2
674,941 + HP15_653 0.11 +1.1
675,027 + HP15_653 0.28 +1.4
675,032 + HP15_653 0.29 +0.5
675,054 - HP15_653 0.33 +1.1
675,111 - HP15_653 0.45 +0.8
675,139 - HP15_653 0.50 +0.1
675,198 + HP15_653 0.62 +0.0
675,250 + HP15_653 0.72 +1.9
675,250 + HP15_653 0.72 +1.4
675,250 - HP15_653 0.72 +0.2
675,258 - HP15_653 0.74 +0.7
675,258 - HP15_653 0.74 +1.8
675,258 - HP15_653 0.74 +0.2
675,309 - HP15_653 0.84 +2.1
675,312 + HP15_653 0.84 +1.0
675,333 + HP15_653 0.88 +1.1
675,333 + HP15_653 0.88 +0.3
675,341 - +0.2
675,341 - +0.2
675,366 - +1.1
675,366 - -0.2
675,366 - +0.6
675,366 - +0.5
675,376 - +0.1

Or see this region's nucleotide sequence