Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06810

Experiment: m.b. nitrite 8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06790 and PGA1_c06800 overlap by 1 nucleotidesPGA1_c06800 and PGA1_c06810 overlap by 1 nucleotidesPGA1_c06810 and PGA1_c06820 overlap by 4 nucleotidesPGA1_c06820 and PGA1_c06830 are separated by 18 nucleotides PGA1_c06790: PGA1_c06790 - putative peptide ABC transporter, permease protein, at 699,158 to 700,138 _c06790 PGA1_c06800: PGA1_c06800 - dipeptide transport system permease protein DppC, at 700,138 to 701,052 _c06800 PGA1_c06810: PGA1_c06810 - putative dipeptide transport ATP-binding protein DppD, at 701,052 to 702,032 _c06810 PGA1_c06820: PGA1_c06820 - dipeptide transport ATP-binding protein DppF, at 702,029 to 702,994 _c06820 PGA1_c06830: PGA1_c06830 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 703,013 to 703,909 _c06830 Position (kb) 701 702 703Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 700.108 kb on + strandat 700.117 kb on + strandat 700.123 kb on + strandat 700.123 kb on + strandat 700.136 kb on - strandat 700.163 kb on - strandat 700.171 kb on - strandat 700.222 kb on + strandat 700.226 kb on - strandat 700.227 kb on + strandat 700.286 kb on + strand, within PGA1_c06800at 700.286 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.300 kb on - strand, within PGA1_c06800at 700.367 kb on + strand, within PGA1_c06800at 700.367 kb on - strand, within PGA1_c06800at 700.425 kb on + strand, within PGA1_c06800at 700.458 kb on + strand, within PGA1_c06800at 700.467 kb on - strand, within PGA1_c06800at 700.467 kb on - strand, within PGA1_c06800at 700.474 kb on - strand, within PGA1_c06800at 700.540 kb on + strand, within PGA1_c06800at 700.561 kb on - strand, within PGA1_c06800at 700.561 kb on - strand, within PGA1_c06800at 700.595 kb on + strand, within PGA1_c06800at 700.595 kb on - strand, within PGA1_c06800at 700.603 kb on - strand, within PGA1_c06800at 700.603 kb on - strand, within PGA1_c06800at 700.686 kb on + strand, within PGA1_c06800at 700.743 kb on + strand, within PGA1_c06800at 700.784 kb on + strand, within PGA1_c06800at 700.785 kb on + strand, within PGA1_c06800at 700.795 kb on - strand, within PGA1_c06800at 700.827 kb on - strand, within PGA1_c06800at 700.860 kb on - strand, within PGA1_c06800at 700.921 kb on + strand, within PGA1_c06800at 700.921 kb on + strand, within PGA1_c06800at 700.921 kb on + strand, within PGA1_c06800at 700.935 kb on + strand, within PGA1_c06800at 700.945 kb on - strand, within PGA1_c06800at 700.955 kb on - strand, within PGA1_c06800at 700.977 kb on - strandat 700.977 kb on - strandat 700.980 kb on + strandat 700.985 kb on + strandat 700.987 kb on - strandat 700.993 kb on - strandat 700.993 kb on - strandat 701.008 kb on - strandat 701.010 kb on + strandat 701.062 kb on - strandat 701.122 kb on - strandat 701.122 kb on - strandat 701.132 kb on + strandat 701.190 kb on + strand, within PGA1_c06810at 701.193 kb on - strand, within PGA1_c06810at 701.203 kb on - strand, within PGA1_c06810at 701.203 kb on - strand, within PGA1_c06810at 701.367 kb on - strand, within PGA1_c06810at 701.413 kb on + strand, within PGA1_c06810at 701.423 kb on + strand, within PGA1_c06810at 701.428 kb on + strand, within PGA1_c06810at 701.431 kb on - strand, within PGA1_c06810at 701.436 kb on - strand, within PGA1_c06810at 701.437 kb on - strand, within PGA1_c06810at 701.438 kb on - strand, within PGA1_c06810at 701.484 kb on + strand, within PGA1_c06810at 701.532 kb on + strand, within PGA1_c06810at 701.558 kb on - strand, within PGA1_c06810at 701.592 kb on - strand, within PGA1_c06810at 701.602 kb on - strand, within PGA1_c06810at 701.602 kb on - strand, within PGA1_c06810at 701.602 kb on - strand, within PGA1_c06810at 701.650 kb on - strand, within PGA1_c06810at 701.650 kb on - strand, within PGA1_c06810at 701.657 kb on - strand, within PGA1_c06810at 701.668 kb on + strand, within PGA1_c06810at 701.676 kb on - strand, within PGA1_c06810at 701.689 kb on + strand, within PGA1_c06810at 701.696 kb on - strand, within PGA1_c06810at 701.697 kb on - strand, within PGA1_c06810at 701.697 kb on - strand, within PGA1_c06810at 701.738 kb on - strand, within PGA1_c06810at 701.738 kb on - strand, within PGA1_c06810at 701.769 kb on + strand, within PGA1_c06810at 701.798 kb on + strand, within PGA1_c06810at 701.798 kb on + strand, within PGA1_c06810at 701.806 kb on - strand, within PGA1_c06810at 701.821 kb on + strand, within PGA1_c06810at 702.053 kb on + strandat 702.056 kb on - strandat 702.077 kb on + strandat 702.148 kb on - strand, within PGA1_c06820at 702.160 kb on + strand, within PGA1_c06820at 702.168 kb on + strand, within PGA1_c06820at 702.195 kb on + strand, within PGA1_c06820at 702.203 kb on - strand, within PGA1_c06820at 702.283 kb on - strand, within PGA1_c06820at 702.297 kb on + strand, within PGA1_c06820at 702.403 kb on - strand, within PGA1_c06820at 702.412 kb on + strand, within PGA1_c06820at 702.520 kb on + strand, within PGA1_c06820at 702.541 kb on + strand, within PGA1_c06820at 702.611 kb on + strand, within PGA1_c06820at 702.611 kb on + strand, within PGA1_c06820at 702.612 kb on - strand, within PGA1_c06820at 702.619 kb on - strand, within PGA1_c06820at 702.619 kb on - strand, within PGA1_c06820at 702.650 kb on - strand, within PGA1_c06820at 702.669 kb on + strand, within PGA1_c06820at 702.682 kb on - strand, within PGA1_c06820at 702.713 kb on - strand, within PGA1_c06820at 702.760 kb on + strand, within PGA1_c06820at 702.778 kb on - strand, within PGA1_c06820at 702.780 kb on + strand, within PGA1_c06820at 702.828 kb on + strand, within PGA1_c06820at 702.836 kb on - strand, within PGA1_c06820at 702.840 kb on + strand, within PGA1_c06820at 702.871 kb on - strand, within PGA1_c06820at 702.923 kb on - strandat 702.925 kb on + strandat 702.925 kb on + strandat 702.925 kb on + strandat 702.927 kb on + strandat 702.927 kb on + strandat 702.927 kb on + strandat 702.933 kb on - strandat 702.933 kb on - strandat 702.933 kb on - strandat 702.934 kb on + strandat 702.935 kb on - strandat 702.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM
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700,108 + -0.1
700,117 + +1.1
700,123 + +0.6
700,123 + -0.5
700,136 - +0.5
700,163 - +0.8
700,171 - -1.0
700,222 + +1.2
700,226 - +0.2
700,227 + +2.3
700,286 + PGA1_c06800 0.16 +0.9
700,286 + PGA1_c06800 0.16 -1.1
700,292 + PGA1_c06800 0.17 -0.3
700,292 + PGA1_c06800 0.17 -0.5
700,292 + PGA1_c06800 0.17 -0.3
700,292 + PGA1_c06800 0.17 -1.6
700,292 + PGA1_c06800 0.17 +0.1
700,292 + PGA1_c06800 0.17 +0.1
700,300 - PGA1_c06800 0.18 -0.7
700,367 + PGA1_c06800 0.25 -0.3
700,367 - PGA1_c06800 0.25 -0.3
700,425 + PGA1_c06800 0.31 -0.6
700,458 + PGA1_c06800 0.35 +0.5
700,467 - PGA1_c06800 0.36 -2.6
700,467 - PGA1_c06800 0.36 +2.3
700,474 - PGA1_c06800 0.37 +3.5
700,540 + PGA1_c06800 0.44 -0.3
700,561 - PGA1_c06800 0.46 -1.6
700,561 - PGA1_c06800 0.46 -2.5
700,595 + PGA1_c06800 0.50 +1.2
700,595 - PGA1_c06800 0.50 -2.3
700,603 - PGA1_c06800 0.51 -1.8
700,603 - PGA1_c06800 0.51 -0.1
700,686 + PGA1_c06800 0.60 -0.7
700,743 + PGA1_c06800 0.66 -0.5
700,784 + PGA1_c06800 0.71 -1.3
700,785 + PGA1_c06800 0.71 -2.2
700,795 - PGA1_c06800 0.72 -0.8
700,827 - PGA1_c06800 0.75 +0.7
700,860 - PGA1_c06800 0.79 -1.9
700,921 + PGA1_c06800 0.86 +0.5
700,921 + PGA1_c06800 0.86 +1.1
700,921 + PGA1_c06800 0.86 -1.4
700,935 + PGA1_c06800 0.87 +0.8
700,945 - PGA1_c06800 0.88 -1.6
700,955 - PGA1_c06800 0.89 +0.7
700,977 - -1.5
700,977 - -0.1
700,980 + -1.3
700,985 + -0.8
700,987 - +1.4
700,993 - +0.6
700,993 - -0.1
701,008 - +0.2
701,010 + +0.9
701,062 - +0.9
701,122 - -1.2
701,122 - -0.1
701,132 + -0.8
701,190 + PGA1_c06810 0.14 -0.8
701,193 - PGA1_c06810 0.14 -0.1
701,203 - PGA1_c06810 0.15 +1.2
701,203 - PGA1_c06810 0.15 +0.6
701,367 - PGA1_c06810 0.32 -0.7
701,413 + PGA1_c06810 0.37 -0.5
701,423 + PGA1_c06810 0.38 +0.3
701,428 + PGA1_c06810 0.38 -1.6
701,431 - PGA1_c06810 0.39 -1.1
701,436 - PGA1_c06810 0.39 +0.4
701,437 - PGA1_c06810 0.39 +1.5
701,438 - PGA1_c06810 0.39 -1.3
701,484 + PGA1_c06810 0.44 -1.8
701,532 + PGA1_c06810 0.49 -0.1
701,558 - PGA1_c06810 0.52 -1.8
701,592 - PGA1_c06810 0.55 +0.4
701,602 - PGA1_c06810 0.56 -1.1
701,602 - PGA1_c06810 0.56 -2.5
701,602 - PGA1_c06810 0.56 -2.7
701,650 - PGA1_c06810 0.61 -0.7
701,650 - PGA1_c06810 0.61 -1.9
701,657 - PGA1_c06810 0.62 +0.8
701,668 + PGA1_c06810 0.63 -3.9
701,676 - PGA1_c06810 0.64 -3.2
701,689 + PGA1_c06810 0.65 -2.5
701,696 - PGA1_c06810 0.66 +1.3
701,697 - PGA1_c06810 0.66 -2.6
701,697 - PGA1_c06810 0.66 +0.8
701,738 - PGA1_c06810 0.70 -0.4
701,738 - PGA1_c06810 0.70 +1.1
701,769 + PGA1_c06810 0.73 -0.3
701,798 + PGA1_c06810 0.76 +0.1
701,798 + PGA1_c06810 0.76 -0.3
701,806 - PGA1_c06810 0.77 -0.2
701,821 + PGA1_c06810 0.78 -1.6
702,053 + -0.3
702,056 - +1.9
702,077 + -0.5
702,148 - PGA1_c06820 0.12 -0.8
702,160 + PGA1_c06820 0.14 +0.9
702,168 + PGA1_c06820 0.14 +1.1
702,195 + PGA1_c06820 0.17 +1.9
702,203 - PGA1_c06820 0.18 +0.4
702,283 - PGA1_c06820 0.26 -0.5
702,297 + PGA1_c06820 0.28 +2.8
702,403 - PGA1_c06820 0.39 -0.8
702,412 + PGA1_c06820 0.40 -1.6
702,520 + PGA1_c06820 0.51 +1.2
702,541 + PGA1_c06820 0.53 +1.1
702,611 + PGA1_c06820 0.60 -3.2
702,611 + PGA1_c06820 0.60 +0.2
702,612 - PGA1_c06820 0.60 -3.1
702,619 - PGA1_c06820 0.61 +1.0
702,619 - PGA1_c06820 0.61 -2.7
702,650 - PGA1_c06820 0.64 -0.3
702,669 + PGA1_c06820 0.66 -3.1
702,682 - PGA1_c06820 0.68 +1.3
702,713 - PGA1_c06820 0.71 -2.1
702,760 + PGA1_c06820 0.76 +1.2
702,778 - PGA1_c06820 0.78 -0.8
702,780 + PGA1_c06820 0.78 +0.9
702,828 + PGA1_c06820 0.83 -0.5
702,836 - PGA1_c06820 0.84 -0.7
702,840 + PGA1_c06820 0.84 -1.5
702,871 - PGA1_c06820 0.87 +1.3
702,923 - +2.9
702,925 + +1.7
702,925 + -1.1
702,925 + -1.8
702,927 + +0.2
702,927 + -2.9
702,927 + -3.0
702,933 - +0.5
702,933 - +0.7
702,933 - -0.2
702,934 + +0.5
702,935 - -1.3
702,997 - +0.1

Or see this region's nucleotide sequence