Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06780 and PGA1_c06790 are separated by 112 nucleotides PGA1_c06790 and PGA1_c06800 overlap by 1 nucleotides PGA1_c06800 and PGA1_c06810 overlap by 1 nucleotides
PGA1_c06780: PGA1_c06780 - putative extracellular solute-binding protein, at 697,465 to 699,045
_c06780
PGA1_c06790: PGA1_c06790 - putative peptide ABC transporter, permease protein, at 699,158 to 700,138
_c06790
PGA1_c06800: PGA1_c06800 - dipeptide transport system permease protein DppC, at 700,138 to 701,052
_c06800
PGA1_c06810: PGA1_c06810 - putative dipeptide transport ATP-binding protein DppD, at 701,052 to 702,032
_c06810
Position (kb) 699
700
701 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 698.197 kb on + strand, within PGA1_c06780 at 698.218 kb on + strand, within PGA1_c06780 at 698.243 kb on + strand, within PGA1_c06780 at 698.257 kb on + strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.269 kb on + strand, within PGA1_c06780 at 698.270 kb on - strand, within PGA1_c06780 at 698.272 kb on + strand, within PGA1_c06780 at 698.272 kb on + strand, within PGA1_c06780 at 698.280 kb on - strand, within PGA1_c06780 at 698.280 kb on - strand, within PGA1_c06780 at 698.302 kb on + strand, within PGA1_c06780 at 698.309 kb on - strand, within PGA1_c06780 at 698.377 kb on + strand, within PGA1_c06780 at 698.498 kb on - strand, within PGA1_c06780 at 698.541 kb on + strand, within PGA1_c06780 at 698.636 kb on - strand, within PGA1_c06780 at 698.643 kb on + strand, within PGA1_c06780 at 698.673 kb on + strand, within PGA1_c06780 at 698.705 kb on - strand, within PGA1_c06780 at 698.720 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.735 kb on + strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.740 kb on + strand, within PGA1_c06780 at 698.740 kb on + strand, within PGA1_c06780 at 698.748 kb on - strand, within PGA1_c06780 at 698.748 kb on - strand, within PGA1_c06780 at 698.772 kb on - strand, within PGA1_c06780 at 698.805 kb on - strand, within PGA1_c06780 at 698.815 kb on + strand, within PGA1_c06780 at 698.844 kb on - strand, within PGA1_c06780 at 698.897 kb on - strand at 698.927 kb on + strand at 698.937 kb on - strand at 698.961 kb on + strand at 698.966 kb on + strand at 698.967 kb on - strand at 698.972 kb on - strand at 699.004 kb on + strand at 699.022 kb on - strand at 699.063 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.076 kb on - strand at 699.076 kb on - strand at 699.076 kb on - strand at 699.076 kb on - strand at 699.076 kb on - strand at 699.112 kb on + strand at 699.158 kb on + strand at 699.158 kb on + strand at 699.158 kb on + strand at 699.180 kb on + strand at 699.185 kb on + strand at 699.185 kb on + strand at 699.265 kb on - strand, within PGA1_c06790 at 699.277 kb on + strand, within PGA1_c06790 at 699.287 kb on + strand, within PGA1_c06790 at 699.305 kb on - strand, within PGA1_c06790 at 699.334 kb on - strand, within PGA1_c06790 at 699.349 kb on - strand, within PGA1_c06790 at 699.384 kb on - strand, within PGA1_c06790 at 699.429 kb on - strand, within PGA1_c06790 at 699.429 kb on - strand, within PGA1_c06790 at 699.431 kb on - strand, within PGA1_c06790 at 699.431 kb on - strand, within PGA1_c06790 at 699.431 kb on - strand, within PGA1_c06790 at 699.447 kb on + strand, within PGA1_c06790 at 699.471 kb on - strand, within PGA1_c06790 at 699.508 kb on + strand, within PGA1_c06790 at 699.516 kb on - strand, within PGA1_c06790 at 699.521 kb on - strand, within PGA1_c06790 at 699.578 kb on + strand, within PGA1_c06790 at 699.636 kb on + strand, within PGA1_c06790 at 699.669 kb on + strand, within PGA1_c06790 at 699.678 kb on - strand, within PGA1_c06790 at 699.708 kb on + strand, within PGA1_c06790 at 699.732 kb on + strand, within PGA1_c06790 at 699.738 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.746 kb on - strand, within PGA1_c06790 at 699.752 kb on - strand, within PGA1_c06790 at 699.752 kb on - strand, within PGA1_c06790 at 699.752 kb on - strand, within PGA1_c06790 at 699.822 kb on - strand, within PGA1_c06790 at 699.874 kb on + strand, within PGA1_c06790 at 699.874 kb on + strand, within PGA1_c06790 at 699.877 kb on - strand, within PGA1_c06790 at 699.879 kb on + strand, within PGA1_c06790 at 699.882 kb on + strand, within PGA1_c06790 at 699.882 kb on - strand, within PGA1_c06790 at 699.882 kb on - strand, within PGA1_c06790 at 699.887 kb on - strand, within PGA1_c06790 at 699.908 kb on - strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.980 kb on - strand, within PGA1_c06790 at 699.982 kb on + strand, within PGA1_c06790 at 700.007 kb on + strand, within PGA1_c06790 at 700.108 kb on + strand at 700.117 kb on + strand at 700.123 kb on + strand at 700.123 kb on + strand at 700.136 kb on - strand at 700.163 kb on - strand at 700.171 kb on - strand at 700.222 kb on + strand at 700.226 kb on - strand at 700.227 kb on + strand at 700.286 kb on + strand, within PGA1_c06800 at 700.286 kb on + strand, within PGA1_c06800 at 700.292 kb on + strand, within PGA1_c06800 at 700.292 kb on + strand, within PGA1_c06800 at 700.292 kb on + strand, within PGA1_c06800 at 700.292 kb on + strand, within PGA1_c06800 at 700.292 kb on + strand, within PGA1_c06800 at 700.292 kb on + strand, within PGA1_c06800 at 700.300 kb on - strand, within PGA1_c06800 at 700.367 kb on + strand, within PGA1_c06800 at 700.367 kb on - strand, within PGA1_c06800 at 700.425 kb on + strand, within PGA1_c06800 at 700.458 kb on + strand, within PGA1_c06800 at 700.467 kb on - strand, within PGA1_c06800 at 700.467 kb on - strand, within PGA1_c06800 at 700.474 kb on - strand, within PGA1_c06800 at 700.540 kb on + strand, within PGA1_c06800 at 700.561 kb on - strand, within PGA1_c06800 at 700.561 kb on - strand, within PGA1_c06800 at 700.595 kb on + strand, within PGA1_c06800 at 700.595 kb on - strand, within PGA1_c06800 at 700.603 kb on - strand, within PGA1_c06800 at 700.603 kb on - strand, within PGA1_c06800 at 700.686 kb on + strand, within PGA1_c06800 at 700.743 kb on + strand, within PGA1_c06800 at 700.784 kb on + strand, within PGA1_c06800 at 700.785 kb on + strand, within PGA1_c06800 at 700.795 kb on - strand, within PGA1_c06800 at 700.827 kb on - strand, within PGA1_c06800 at 700.860 kb on - strand, within PGA1_c06800 at 700.921 kb on + strand, within PGA1_c06800 at 700.921 kb on + strand, within PGA1_c06800 at 700.921 kb on + strand, within PGA1_c06800 at 700.935 kb on + strand, within PGA1_c06800 at 700.945 kb on - strand, within PGA1_c06800 at 700.955 kb on - strand, within PGA1_c06800 at 700.977 kb on - strand at 700.977 kb on - strand at 700.980 kb on + strand at 700.985 kb on + strand at 700.987 kb on - strand at 700.993 kb on - strand at 700.993 kb on - strand at 701.008 kb on - strand at 701.010 kb on + strand at 701.062 kb on - strand at 701.122 kb on - strand at 701.122 kb on - strand at 701.132 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 698,197 + PGA1_c06780 0.46 -0.2 698,218 + PGA1_c06780 0.48 +1.0 698,243 + PGA1_c06780 0.49 -1.1 698,257 + PGA1_c06780 0.50 -1.3 698,260 - PGA1_c06780 0.50 -0.5 698,260 - PGA1_c06780 0.50 -0.6 698,260 - PGA1_c06780 0.50 -0.4 698,260 - PGA1_c06780 0.50 +1.1 698,260 - PGA1_c06780 0.50 +1.4 698,260 - PGA1_c06780 0.50 +0.5 698,269 + PGA1_c06780 0.51 -2.7 698,270 - PGA1_c06780 0.51 -1.5 698,272 + PGA1_c06780 0.51 +0.7 698,272 + PGA1_c06780 0.51 +1.4 698,280 - PGA1_c06780 0.52 +0.4 698,280 - PGA1_c06780 0.52 -3.4 698,302 + PGA1_c06780 0.53 -0.1 698,309 - PGA1_c06780 0.53 -0.1 698,377 + PGA1_c06780 0.58 -0.3 698,498 - PGA1_c06780 0.65 -2.3 698,541 + PGA1_c06780 0.68 +0.3 698,636 - PGA1_c06780 0.74 +0.7 698,643 + PGA1_c06780 0.75 -2.1 698,673 + PGA1_c06780 0.76 -0.1 698,705 - PGA1_c06780 0.78 +0.8 698,720 + PGA1_c06780 0.79 -2.3 698,730 + PGA1_c06780 0.80 +1.0 698,730 + PGA1_c06780 0.80 -0.5 698,730 + PGA1_c06780 0.80 -2.6 698,730 + PGA1_c06780 0.80 +1.7 698,730 + PGA1_c06780 0.80 +1.5 698,735 + PGA1_c06780 0.80 +0.3 698,738 - PGA1_c06780 0.81 -1.1 698,738 - PGA1_c06780 0.81 -1.5 698,738 - PGA1_c06780 0.81 +0.9 698,738 - PGA1_c06780 0.81 +0.5 698,738 - PGA1_c06780 0.81 -1.6 698,738 - PGA1_c06780 0.81 +0.7 698,738 - PGA1_c06780 0.81 -0.5 698,740 + PGA1_c06780 0.81 -2.3 698,740 + PGA1_c06780 0.81 -2.8 698,748 - PGA1_c06780 0.81 +0.5 698,748 - PGA1_c06780 0.81 -0.5 698,772 - PGA1_c06780 0.83 +1.0 698,805 - PGA1_c06780 0.85 +0.7 698,815 + PGA1_c06780 0.85 +0.8 698,844 - PGA1_c06780 0.87 +0.2 698,897 - -0.4 698,927 + +0.1 698,937 - -1.2 698,961 + -0.1 698,966 + -2.2 698,967 - -0.2 698,972 - -0.7 699,004 + +1.0 699,022 - +0.4 699,063 + +0.9 699,068 + -2.4 699,068 + -1.1 699,068 + +1.5 699,068 + +2.2 699,068 + -1.3 699,068 + +0.7 699,068 + -1.1 699,076 - +0.6 699,076 - -0.5 699,076 - +1.3 699,076 - -0.5 699,076 - +0.0 699,112 + -0.4 699,158 + +0.9 699,158 + +0.1 699,158 + -0.6 699,180 + -0.1 699,185 + -0.5 699,185 + -0.4 699,265 - PGA1_c06790 0.11 +2.2 699,277 + PGA1_c06790 0.12 +1.5 699,287 + PGA1_c06790 0.13 +1.2 699,305 - PGA1_c06790 0.15 -0.1 699,334 - PGA1_c06790 0.18 -2.4 699,349 - PGA1_c06790 0.19 -1.1 699,384 - PGA1_c06790 0.23 +1.4 699,429 - PGA1_c06790 0.28 +0.1 699,429 - PGA1_c06790 0.28 -1.7 699,431 - PGA1_c06790 0.28 +0.4 699,431 - PGA1_c06790 0.28 +0.2 699,431 - PGA1_c06790 0.28 -0.8 699,447 + PGA1_c06790 0.29 +2.4 699,471 - PGA1_c06790 0.32 -1.1 699,508 + PGA1_c06790 0.36 +0.0 699,516 - PGA1_c06790 0.36 -0.8 699,521 - PGA1_c06790 0.37 +0.5 699,578 + PGA1_c06790 0.43 +1.4 699,636 + PGA1_c06790 0.49 +0.4 699,669 + PGA1_c06790 0.52 +0.7 699,678 - PGA1_c06790 0.53 +0.8 699,708 + PGA1_c06790 0.56 -0.7 699,732 + PGA1_c06790 0.59 -1.2 699,738 + PGA1_c06790 0.59 -1.6 699,744 + PGA1_c06790 0.60 +1.5 699,744 + PGA1_c06790 0.60 +0.7 699,744 + PGA1_c06790 0.60 +1.5 699,744 + PGA1_c06790 0.60 +0.5 699,746 - PGA1_c06790 0.60 +1.5 699,752 - PGA1_c06790 0.61 +0.1 699,752 - PGA1_c06790 0.61 -2.5 699,752 - PGA1_c06790 0.61 +2.6 699,822 - PGA1_c06790 0.68 +2.6 699,874 + PGA1_c06790 0.73 +1.2 699,874 + PGA1_c06790 0.73 +0.3 699,877 - PGA1_c06790 0.73 +1.5 699,879 + PGA1_c06790 0.73 +0.0 699,882 + PGA1_c06790 0.74 +1.1 699,882 - PGA1_c06790 0.74 +1.1 699,882 - PGA1_c06790 0.74 -0.4 699,887 - PGA1_c06790 0.74 -0.1 699,908 - PGA1_c06790 0.76 +0.3 699,972 + PGA1_c06790 0.83 -0.1 699,972 + PGA1_c06790 0.83 +1.9 699,972 + PGA1_c06790 0.83 +0.0 699,972 + PGA1_c06790 0.83 -1.3 699,980 - PGA1_c06790 0.84 -2.3 699,982 + PGA1_c06790 0.84 +0.9 700,007 + PGA1_c06790 0.87 +1.7 700,108 + -0.1 700,117 + +1.1 700,123 + +0.6 700,123 + -0.5 700,136 - +0.5 700,163 - +0.8 700,171 - -1.0 700,222 + +1.2 700,226 - +0.2 700,227 + +2.3 700,286 + PGA1_c06800 0.16 +0.9 700,286 + PGA1_c06800 0.16 -1.1 700,292 + PGA1_c06800 0.17 -0.3 700,292 + PGA1_c06800 0.17 -0.5 700,292 + PGA1_c06800 0.17 -0.3 700,292 + PGA1_c06800 0.17 -1.6 700,292 + PGA1_c06800 0.17 +0.1 700,292 + PGA1_c06800 0.17 +0.1 700,300 - PGA1_c06800 0.18 -0.7 700,367 + PGA1_c06800 0.25 -0.3 700,367 - PGA1_c06800 0.25 -0.3 700,425 + PGA1_c06800 0.31 -0.6 700,458 + PGA1_c06800 0.35 +0.5 700,467 - PGA1_c06800 0.36 -2.6 700,467 - PGA1_c06800 0.36 +2.3 700,474 - PGA1_c06800 0.37 +3.5 700,540 + PGA1_c06800 0.44 -0.3 700,561 - PGA1_c06800 0.46 -1.6 700,561 - PGA1_c06800 0.46 -2.5 700,595 + PGA1_c06800 0.50 +1.2 700,595 - PGA1_c06800 0.50 -2.3 700,603 - PGA1_c06800 0.51 -1.8 700,603 - PGA1_c06800 0.51 -0.1 700,686 + PGA1_c06800 0.60 -0.7 700,743 + PGA1_c06800 0.66 -0.5 700,784 + PGA1_c06800 0.71 -1.3 700,785 + PGA1_c06800 0.71 -2.2 700,795 - PGA1_c06800 0.72 -0.8 700,827 - PGA1_c06800 0.75 +0.7 700,860 - PGA1_c06800 0.79 -1.9 700,921 + PGA1_c06800 0.86 +0.5 700,921 + PGA1_c06800 0.86 +1.1 700,921 + PGA1_c06800 0.86 -1.4 700,935 + PGA1_c06800 0.87 +0.8 700,945 - PGA1_c06800 0.88 -1.6 700,955 - PGA1_c06800 0.89 +0.7 700,977 - -1.5 700,977 - -0.1 700,980 + -1.3 700,985 + -0.8 700,987 - +1.4 700,993 - +0.6 700,993 - -0.1 701,008 - +0.2 701,010 + +0.9 701,062 - +0.9 701,122 - -1.2 701,122 - -0.1 701,132 + -0.8
Or see this region's nucleotide sequence