Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06360 and PGA1_c06370 are separated by 219 nucleotides PGA1_c06370 and PGA1_c06380 are separated by 183 nucleotides PGA1_c06380 and PGA1_c06390 are separated by 192 nucleotides
PGA1_c06360: PGA1_c06360 - Secreted and surface protein containing fasciclin-like repeats, at 651,589 to 652,065
_c06360
PGA1_c06370: PGA1_c06370 - adenine phosphoribosyltransferase Apt, at 652,285 to 652,824
_c06370
PGA1_c06380: PGA1_c06380 - putative methylthioadenosine phosphorylase, at 653,008 to 654,021
_c06380
PGA1_c06390: PGA1_c06390 - putative sulfate transporter, at 654,214 to 655,854
_c06390
Position (kb) 653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 652.042 kb on + strand at 652.042 kb on + strand at 652.050 kb on - strand at 652.068 kb on + strand at 652.080 kb on + strand at 652.088 kb on - strand at 652.101 kb on - strand at 652.113 kb on + strand at 652.121 kb on - strand at 652.121 kb on - strand at 652.121 kb on - strand at 652.300 kb on - strand at 652.306 kb on - strand at 652.317 kb on + strand at 652.341 kb on - strand, within PGA1_c06370 at 652.424 kb on - strand, within PGA1_c06370 at 652.424 kb on - strand, within PGA1_c06370 at 652.508 kb on + strand, within PGA1_c06370 at 652.595 kb on - strand, within PGA1_c06370 at 652.629 kb on + strand, within PGA1_c06370 at 652.775 kb on - strand at 652.900 kb on - strand at 652.962 kb on + strand at 652.964 kb on - strand at 653.006 kb on + strand at 653.008 kb on - strand at 653.086 kb on - strand at 653.137 kb on + strand, within PGA1_c06380 at 653.251 kb on - strand, within PGA1_c06380 at 653.311 kb on - strand, within PGA1_c06380 at 653.337 kb on + strand, within PGA1_c06380 at 653.345 kb on - strand, within PGA1_c06380 at 653.500 kb on + strand, within PGA1_c06380 at 653.617 kb on + strand, within PGA1_c06380 at 653.643 kb on + strand, within PGA1_c06380 at 653.651 kb on - strand, within PGA1_c06380 at 653.651 kb on - strand, within PGA1_c06380 at 653.764 kb on + strand, within PGA1_c06380 at 653.767 kb on - strand, within PGA1_c06380 at 653.778 kb on + strand, within PGA1_c06380 at 653.783 kb on + strand, within PGA1_c06380 at 653.894 kb on + strand, within PGA1_c06380 at 653.925 kb on - strand at 653.926 kb on - strand at 654.018 kb on + strand at 654.018 kb on + strand at 654.018 kb on + strand at 654.019 kb on + strand at 654.022 kb on - strand at 654.028 kb on - strand at 654.063 kb on + strand at 654.063 kb on + strand at 654.063 kb on + strand at 654.071 kb on - strand at 654.071 kb on - strand at 654.072 kb on - strand at 654.104 kb on - strand at 654.130 kb on + strand at 654.143 kb on + strand at 654.151 kb on - strand at 654.203 kb on + strand at 654.224 kb on + strand at 654.279 kb on + strand at 654.321 kb on - strand at 654.412 kb on + strand, within PGA1_c06390 at 654.507 kb on + strand, within PGA1_c06390 at 654.516 kb on + strand, within PGA1_c06390 at 654.542 kb on + strand, within PGA1_c06390 at 654.562 kb on + strand, within PGA1_c06390 at 654.620 kb on + strand, within PGA1_c06390 at 654.681 kb on + strand, within PGA1_c06390 at 654.689 kb on - strand, within PGA1_c06390 at 654.776 kb on - strand, within PGA1_c06390 at 654.787 kb on - strand, within PGA1_c06390 at 654.931 kb on + strand, within PGA1_c06390 at 654.939 kb on - strand, within PGA1_c06390
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 652,042 + -1.2 652,042 + -1.5 652,050 - +3.6 652,068 + -1.2 652,080 + -0.3 652,088 - -0.6 652,101 - +0.8 652,113 + -3.3 652,121 - -2.0 652,121 - -1.2 652,121 - -1.7 652,300 - -0.4 652,306 - -0.9 652,317 + +0.8 652,341 - PGA1_c06370 0.10 -0.1 652,424 - PGA1_c06370 0.26 -3.3 652,424 - PGA1_c06370 0.26 -0.8 652,508 + PGA1_c06370 0.41 -1.0 652,595 - PGA1_c06370 0.57 +0.6 652,629 + PGA1_c06370 0.64 +0.2 652,775 - -1.4 652,900 - +0.2 652,962 + -2.8 652,964 - +0.0 653,006 + -1.0 653,008 - -0.9 653,086 - -1.5 653,137 + PGA1_c06380 0.13 -1.1 653,251 - PGA1_c06380 0.24 -0.4 653,311 - PGA1_c06380 0.30 -0.1 653,337 + PGA1_c06380 0.32 -2.8 653,345 - PGA1_c06380 0.33 +0.2 653,500 + PGA1_c06380 0.49 -3.0 653,617 + PGA1_c06380 0.60 -1.7 653,643 + PGA1_c06380 0.63 -0.1 653,651 - PGA1_c06380 0.63 -0.8 653,651 - PGA1_c06380 0.63 -1.4 653,764 + PGA1_c06380 0.75 -0.7 653,767 - PGA1_c06380 0.75 -0.9 653,778 + PGA1_c06380 0.76 -1.4 653,783 + PGA1_c06380 0.76 -1.7 653,894 + PGA1_c06380 0.87 -2.0 653,925 - -1.8 653,926 - +1.4 654,018 + -2.0 654,018 + -0.4 654,018 + +1.2 654,019 + -0.4 654,022 - +0.6 654,028 - +1.9 654,063 + -0.9 654,063 + -1.1 654,063 + -3.2 654,071 - -0.4 654,071 - -1.3 654,072 - +1.0 654,104 - +0.1 654,130 + -1.2 654,143 + +1.5 654,151 - +1.6 654,203 + +0.7 654,224 + -1.4 654,279 + -2.5 654,321 - -1.6 654,412 + PGA1_c06390 0.12 +0.3 654,507 + PGA1_c06390 0.18 +1.0 654,516 + PGA1_c06390 0.18 +0.2 654,542 + PGA1_c06390 0.20 +0.8 654,562 + PGA1_c06390 0.21 -1.7 654,620 + PGA1_c06390 0.25 -0.0 654,681 + PGA1_c06390 0.28 -0.4 654,689 - PGA1_c06390 0.29 +1.1 654,776 - PGA1_c06390 0.34 +0.6 654,787 - PGA1_c06390 0.35 -1.2 654,931 + PGA1_c06390 0.44 -2.5 654,939 - PGA1_c06390 0.44 +0.6
Or see this region's nucleotide sequence