Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06250 and PGA1_c06260 are separated by 122 nucleotides PGA1_c06260 and PGA1_c06270 are separated by 1 nucleotides PGA1_c06270 and PGA1_c06280 overlap by 1 nucleotides PGA1_c06280 and PGA1_c06290 are separated by 24 nucleotides
PGA1_c06250: PGA1_c06250 - cytochrome c oxidase subunit 2, at 641,067 to 641,906
_c06250
PGA1_c06260: PGA1_c06260 - protoheme IX farnesyltransferase CtaB, at 642,029 to 642,970
_c06260
PGA1_c06270: PGA1_c06270 - hypothetical protein, at 642,972 to 643,151
_c06270
PGA1_c06280: PGA1_c06280 - cytochrome c oxidase assembly protein CtaG, at 643,151 to 643,738
_c06280
PGA1_c06290: PGA1_c06290 - cytochrome c oxidase subunit 3, at 643,763 to 644,578
_c06290
Position (kb) 642
643 Strain fitness (log2 ratio) -2
-1
0
1 at 641.061 kb on - strand at 641.895 kb on + strand at 641.908 kb on - strand at 642.049 kb on + strand at 642.175 kb on + strand, within PGA1_c06260 at 642.708 kb on - strand, within PGA1_c06260 at 643.133 kb on + strand, within PGA1_c06270 at 643.140 kb on + strand at 643.352 kb on - strand, within PGA1_c06280 at 643.648 kb on + strand, within PGA1_c06280 at 643.656 kb on - strand, within PGA1_c06280
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 641,061 - -2.4 641,895 + -1.6 641,908 - -1.9 642,049 + -2.1 642,175 + PGA1_c06260 0.15 -0.0 642,708 - PGA1_c06260 0.72 -1.6 643,133 + PGA1_c06270 0.89 -0.4 643,140 + -0.2 643,352 - PGA1_c06280 0.34 -2.6 643,648 + PGA1_c06280 0.85 -2.7 643,656 - PGA1_c06280 0.86 -1.2
Or see this region's nucleotide sequence