Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_590 and HP15_591 are separated by 147 nucleotides HP15_591 and HP15_592 are separated by 75 nucleotides HP15_592 and HP15_593 are separated by 127 nucleotides HP15_593 and HP15_594 are separated by 122 nucleotides HP15_594 and HP15_595 are separated by 73 nucleotides
HP15_590: HP15_590 - haloalkane dehalogenase, at 611,012 to 611,911
_590
HP15_591: HP15_591 - conserved hypothetical protein, at 612,059 to 612,307
_591
HP15_592: HP15_592 - conserved hypothetical protein, at 612,383 to 612,733
_592
HP15_593: HP15_593 - protein belonging to uncharacterized protein family UPF0118, at 612,861 to 613,976
_593
HP15_594: HP15_594 - peptidoglycan-binding domain 1 protein-like protein, at 614,099 to 614,518
_594
HP15_595: HP15_595 - dihydroxy-acid dehydratase, at 614,592 to 616,385
_595
Position (kb) 612
613
614 Strain fitness (log2 ratio) -1
0
1 at 612.041 kb on - strand at 612.051 kb on - strand at 612.109 kb on - strand, within HP15_591 at 612.145 kb on - strand, within HP15_591 at 612.145 kb on - strand, within HP15_591 at 612.149 kb on + strand, within HP15_591 at 612.162 kb on + strand, within HP15_591 at 612.240 kb on + strand, within HP15_591 at 612.269 kb on - strand, within HP15_591 at 612.285 kb on - strand at 612.293 kb on - strand at 612.334 kb on - strand at 612.405 kb on + strand at 612.450 kb on - strand, within HP15_592 at 612.499 kb on + strand, within HP15_592 at 612.499 kb on + strand, within HP15_592 at 612.507 kb on - strand, within HP15_592 at 612.558 kb on + strand, within HP15_592 at 612.659 kb on + strand, within HP15_592 at 612.660 kb on + strand, within HP15_592 at 612.667 kb on - strand, within HP15_592 at 612.816 kb on - strand at 612.816 kb on - strand at 612.848 kb on - strand at 613.139 kb on + strand, within HP15_593 at 613.166 kb on + strand, within HP15_593 at 613.203 kb on + strand, within HP15_593 at 613.219 kb on - strand, within HP15_593 at 613.225 kb on - strand, within HP15_593 at 613.427 kb on - strand, within HP15_593 at 613.467 kb on + strand, within HP15_593 at 613.467 kb on + strand, within HP15_593 at 613.468 kb on - strand, within HP15_593 at 613.568 kb on + strand, within HP15_593 at 613.568 kb on + strand, within HP15_593 at 613.568 kb on + strand, within HP15_593 at 613.568 kb on + strand, within HP15_593 at 613.576 kb on - strand, within HP15_593 at 613.576 kb on - strand, within HP15_593 at 613.576 kb on - strand, within HP15_593 at 613.576 kb on - strand, within HP15_593 at 613.740 kb on + strand, within HP15_593 at 613.743 kb on - strand, within HP15_593 at 613.782 kb on - strand, within HP15_593 at 613.864 kb on - strand, within HP15_593 at 613.909 kb on + strand at 613.929 kb on + strand at 614.021 kb on - strand at 614.032 kb on + strand at 614.072 kb on + strand at 614.225 kb on + strand, within HP15_594 at 614.225 kb on + strand, within HP15_594 at 614.225 kb on + strand, within HP15_594 at 614.417 kb on + strand, within HP15_594 at 614.715 kb on + strand at 614.875 kb on - strand, within HP15_595 at 614.908 kb on + strand, within HP15_595
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 5 mM remove 612,041 - -0.6 612,051 - +0.5 612,109 - HP15_591 0.20 -0.2 612,145 - HP15_591 0.35 +0.1 612,145 - HP15_591 0.35 -0.1 612,149 + HP15_591 0.36 -0.6 612,162 + HP15_591 0.41 -1.4 612,240 + HP15_591 0.73 -0.6 612,269 - HP15_591 0.84 -0.5 612,285 - -0.3 612,293 - -0.0 612,334 - -0.1 612,405 + -0.5 612,450 - HP15_592 0.19 -0.4 612,499 + HP15_592 0.33 +0.1 612,499 + HP15_592 0.33 +0.3 612,507 - HP15_592 0.35 +0.2 612,558 + HP15_592 0.50 +0.3 612,659 + HP15_592 0.79 +0.4 612,660 + HP15_592 0.79 +1.0 612,667 - HP15_592 0.81 +0.2 612,816 - +0.6 612,816 - -0.7 612,848 - +0.7 613,139 + HP15_593 0.25 -1.0 613,166 + HP15_593 0.27 +0.0 613,203 + HP15_593 0.31 -0.3 613,219 - HP15_593 0.32 +0.3 613,225 - HP15_593 0.33 -0.3 613,427 - HP15_593 0.51 +0.2 613,467 + HP15_593 0.54 -0.4 613,467 + HP15_593 0.54 -1.1 613,468 - HP15_593 0.54 -0.1 613,568 + HP15_593 0.63 +0.0 613,568 + HP15_593 0.63 -0.1 613,568 + HP15_593 0.63 -0.6 613,568 + HP15_593 0.63 -0.1 613,576 - HP15_593 0.64 -0.2 613,576 - HP15_593 0.64 -0.5 613,576 - HP15_593 0.64 +0.6 613,576 - HP15_593 0.64 -1.1 613,740 + HP15_593 0.79 +0.1 613,743 - HP15_593 0.79 +0.0 613,782 - HP15_593 0.83 -1.2 613,864 - HP15_593 0.90 -0.6 613,909 + +0.2 613,929 + -0.0 614,021 - -0.3 614,032 + +0.7 614,072 + -0.2 614,225 + HP15_594 0.30 +0.6 614,225 + HP15_594 0.30 +0.4 614,225 + HP15_594 0.30 -0.6 614,417 + HP15_594 0.76 +0.3 614,715 + +0.5 614,875 - HP15_595 0.16 +0.6 614,908 + HP15_595 0.18 -0.7
Or see this region's nucleotide sequence