Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06220 and PGA1_c06230 are separated by 113 nucleotides PGA1_c06230 and PGA1_c06240 are separated by 319 nucleotides
PGA1_c06220: PGA1_c06220 - DNA topoisomerase TopA, at 635,072 to 637,774
_c06220
PGA1_c06230: PGA1_c06230 - putative protein Smf, at 637,888 to 639,126
_c06230
PGA1_c06240: PGA1_c06240 - protein TldD, at 639,446 to 640,867
_c06240
Position (kb) 637
638
639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 637.881 kb on - strand at 637.889 kb on - strand at 637.891 kb on + strand at 637.976 kb on + strand at 638.069 kb on + strand, within PGA1_c06230 at 638.100 kb on + strand, within PGA1_c06230 at 638.108 kb on - strand, within PGA1_c06230 at 638.120 kb on - strand, within PGA1_c06230 at 638.197 kb on + strand, within PGA1_c06230 at 638.267 kb on - strand, within PGA1_c06230 at 638.285 kb on - strand, within PGA1_c06230 at 638.293 kb on + strand, within PGA1_c06230 at 638.301 kb on - strand, within PGA1_c06230 at 638.339 kb on + strand, within PGA1_c06230 at 638.492 kb on + strand, within PGA1_c06230 at 638.492 kb on + strand, within PGA1_c06230 at 638.531 kb on - strand, within PGA1_c06230 at 638.531 kb on - strand, within PGA1_c06230 at 638.531 kb on - strand, within PGA1_c06230 at 638.531 kb on - strand, within PGA1_c06230 at 638.569 kb on - strand, within PGA1_c06230 at 638.569 kb on - strand, within PGA1_c06230 at 638.592 kb on + strand, within PGA1_c06230 at 638.652 kb on + strand, within PGA1_c06230 at 638.675 kb on + strand, within PGA1_c06230 at 638.677 kb on - strand, within PGA1_c06230 at 638.772 kb on - strand, within PGA1_c06230 at 638.785 kb on - strand, within PGA1_c06230 at 638.930 kb on + strand, within PGA1_c06230 at 638.954 kb on + strand, within PGA1_c06230 at 638.962 kb on - strand, within PGA1_c06230 at 638.977 kb on + strand, within PGA1_c06230 at 639.032 kb on + strand at 639.088 kb on - strand at 639.089 kb on + strand at 639.090 kb on - strand at 639.095 kb on - strand at 639.097 kb on - strand at 639.116 kb on - strand at 639.130 kb on - strand at 639.155 kb on + strand at 639.158 kb on - strand at 639.160 kb on + strand at 639.163 kb on + strand at 639.168 kb on - strand at 639.171 kb on + strand at 639.277 kb on + strand at 639.301 kb on + strand at 639.431 kb on - strand at 639.443 kb on + strand at 639.443 kb on + strand at 639.451 kb on - strand at 639.451 kb on - strand at 639.451 kb on - strand at 639.451 kb on - strand at 639.451 kb on - strand at 639.479 kb on + strand at 639.515 kb on + strand at 639.516 kb on + strand at 639.516 kb on + strand at 639.551 kb on + strand at 639.624 kb on + strand, within PGA1_c06240 at 639.632 kb on - strand, within PGA1_c06240 at 639.632 kb on - strand, within PGA1_c06240 at 639.672 kb on + strand, within PGA1_c06240 at 639.732 kb on + strand, within PGA1_c06240 at 639.753 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.798 kb on - strand, within PGA1_c06240 at 639.798 kb on - strand, within PGA1_c06240 at 639.798 kb on - strand, within PGA1_c06240 at 639.798 kb on - strand, within PGA1_c06240 at 639.811 kb on - strand, within PGA1_c06240 at 639.868 kb on - strand, within PGA1_c06240 at 639.918 kb on + strand, within PGA1_c06240 at 640.038 kb on + strand, within PGA1_c06240 at 640.090 kb on + strand, within PGA1_c06240
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 637,881 - -1.0 637,889 - +0.2 637,891 + +1.4 637,976 + +0.7 638,069 + PGA1_c06230 0.15 -0.5 638,100 + PGA1_c06230 0.17 +0.2 638,108 - PGA1_c06230 0.18 -0.6 638,120 - PGA1_c06230 0.19 +1.6 638,197 + PGA1_c06230 0.25 -0.9 638,267 - PGA1_c06230 0.31 +0.4 638,285 - PGA1_c06230 0.32 +1.2 638,293 + PGA1_c06230 0.33 +2.3 638,301 - PGA1_c06230 0.33 +0.1 638,339 + PGA1_c06230 0.36 +1.8 638,492 + PGA1_c06230 0.49 +1.8 638,492 + PGA1_c06230 0.49 +1.1 638,531 - PGA1_c06230 0.52 -1.6 638,531 - PGA1_c06230 0.52 -2.4 638,531 - PGA1_c06230 0.52 +2.3 638,531 - PGA1_c06230 0.52 +0.2 638,569 - PGA1_c06230 0.55 +0.8 638,569 - PGA1_c06230 0.55 -0.5 638,592 + PGA1_c06230 0.57 -1.9 638,652 + PGA1_c06230 0.62 +0.1 638,675 + PGA1_c06230 0.64 +0.2 638,677 - PGA1_c06230 0.64 +1.3 638,772 - PGA1_c06230 0.71 +0.9 638,785 - PGA1_c06230 0.72 +0.6 638,930 + PGA1_c06230 0.84 -0.5 638,954 + PGA1_c06230 0.86 +0.0 638,962 - PGA1_c06230 0.87 +1.9 638,977 + PGA1_c06230 0.88 -0.1 639,032 + -1.7 639,088 - -0.4 639,089 + +1.1 639,090 - -0.3 639,095 - +2.2 639,097 - -2.6 639,116 - +0.5 639,130 - -1.2 639,155 + -2.8 639,158 - -0.7 639,160 + -1.3 639,163 + -0.8 639,168 - -2.6 639,171 + -1.2 639,277 + +0.7 639,301 + -0.4 639,431 - -1.0 639,443 + -3.5 639,443 + +0.6 639,451 - -0.0 639,451 - +0.2 639,451 - -1.4 639,451 - -0.7 639,451 - +1.0 639,479 + -1.7 639,515 + -1.0 639,516 + -1.0 639,516 + -0.0 639,551 + +1.1 639,624 + PGA1_c06240 0.13 -0.7 639,632 - PGA1_c06240 0.13 +1.3 639,632 - PGA1_c06240 0.13 +0.5 639,672 + PGA1_c06240 0.16 +1.2 639,732 + PGA1_c06240 0.20 -0.9 639,753 + PGA1_c06240 0.22 +1.3 639,790 + PGA1_c06240 0.24 -2.0 639,790 + PGA1_c06240 0.24 +3.2 639,790 + PGA1_c06240 0.24 +1.0 639,790 + PGA1_c06240 0.24 -1.3 639,790 + PGA1_c06240 0.24 -2.9 639,798 - PGA1_c06240 0.25 +0.7 639,798 - PGA1_c06240 0.25 -0.7 639,798 - PGA1_c06240 0.25 +1.8 639,798 - PGA1_c06240 0.25 -0.3 639,811 - PGA1_c06240 0.26 +0.6 639,868 - PGA1_c06240 0.30 -0.2 639,918 + PGA1_c06240 0.33 -0.3 640,038 + PGA1_c06240 0.42 -0.5 640,090 + PGA1_c06240 0.45 +0.1
Or see this region's nucleotide sequence