Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06120 and PGA1_c06130 are separated by 200 nucleotides PGA1_c06130 and PGA1_c06140 are separated by 19 nucleotides
PGA1_c06120: PGA1_c06120 - Flp pilus assembly protein, ATPase CpaE, at 626,301 to 627,533
_c06120
PGA1_c06130: PGA1_c06130 - outer membrane protein OmpA-like protein, at 627,734 to 628,360
_c06130
PGA1_c06140: PGA1_c06140 - putative bacterial type II/III secretion system protein, at 628,380 to 629,834
_c06140
Position (kb) 627
628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 626.742 kb on - strand, within PGA1_c06120 at 626.800 kb on + strand, within PGA1_c06120 at 626.800 kb on + strand, within PGA1_c06120 at 626.819 kb on + strand, within PGA1_c06120 at 626.917 kb on - strand, within PGA1_c06120 at 626.917 kb on - strand, within PGA1_c06120 at 626.919 kb on + strand, within PGA1_c06120 at 626.919 kb on + strand, within PGA1_c06120 at 626.969 kb on - strand, within PGA1_c06120 at 627.050 kb on - strand, within PGA1_c06120 at 627.115 kb on - strand, within PGA1_c06120 at 627.117 kb on + strand, within PGA1_c06120 at 627.178 kb on + strand, within PGA1_c06120 at 627.216 kb on + strand, within PGA1_c06120 at 627.234 kb on + strand, within PGA1_c06120 at 627.239 kb on + strand, within PGA1_c06120 at 627.242 kb on - strand, within PGA1_c06120 at 627.338 kb on - strand, within PGA1_c06120 at 627.420 kb on - strand at 627.455 kb on + strand at 627.463 kb on - strand at 627.470 kb on + strand at 627.470 kb on + strand at 627.470 kb on + strand at 627.478 kb on - strand at 627.504 kb on + strand at 627.536 kb on + strand at 627.544 kb on - strand at 627.551 kb on - strand at 627.567 kb on - strand at 627.590 kb on + strand at 627.625 kb on - strand at 627.663 kb on - strand at 627.689 kb on - strand at 627.691 kb on + strand at 627.691 kb on + strand at 627.691 kb on + strand at 627.694 kb on - strand at 627.701 kb on + strand at 627.701 kb on + strand at 627.709 kb on - strand at 627.720 kb on - strand at 627.722 kb on + strand at 627.777 kb on + strand at 627.785 kb on - strand at 627.811 kb on + strand, within PGA1_c06130 at 627.982 kb on - strand, within PGA1_c06130 at 627.992 kb on + strand, within PGA1_c06130 at 628.000 kb on - strand, within PGA1_c06130 at 628.013 kb on + strand, within PGA1_c06130 at 628.136 kb on - strand, within PGA1_c06130 at 628.136 kb on - strand, within PGA1_c06130 at 628.157 kb on + strand, within PGA1_c06130 at 628.268 kb on + strand, within PGA1_c06130 at 628.268 kb on + strand, within PGA1_c06130 at 628.291 kb on - strand, within PGA1_c06130 at 628.291 kb on - strand, within PGA1_c06130 at 628.323 kb on + strand at 628.331 kb on - strand at 628.331 kb on - strand at 628.331 kb on - strand at 628.333 kb on + strand at 628.413 kb on + strand at 628.476 kb on - strand at 628.508 kb on - strand at 628.518 kb on + strand at 628.553 kb on - strand, within PGA1_c06140 at 628.613 kb on - strand, within PGA1_c06140 at 628.680 kb on + strand, within PGA1_c06140 at 628.680 kb on + strand, within PGA1_c06140 at 628.688 kb on - strand, within PGA1_c06140 at 628.701 kb on + strand, within PGA1_c06140 at 628.709 kb on - strand, within PGA1_c06140 at 628.735 kb on - strand, within PGA1_c06140 at 628.759 kb on + strand, within PGA1_c06140 at 628.843 kb on - strand, within PGA1_c06140 at 628.863 kb on + strand, within PGA1_c06140 at 628.890 kb on - strand, within PGA1_c06140 at 628.910 kb on - strand, within PGA1_c06140 at 628.926 kb on + strand, within PGA1_c06140 at 629.016 kb on - strand, within PGA1_c06140 at 629.053 kb on - strand, within PGA1_c06140 at 629.099 kb on - strand, within PGA1_c06140 at 629.128 kb on - strand, within PGA1_c06140 at 629.189 kb on + strand, within PGA1_c06140 at 629.214 kb on - strand, within PGA1_c06140 at 629.311 kb on - strand, within PGA1_c06140 at 629.353 kb on + strand, within PGA1_c06140
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 626,742 - PGA1_c06120 0.36 +1.2 626,800 + PGA1_c06120 0.40 -1.7 626,800 + PGA1_c06120 0.40 -0.8 626,819 + PGA1_c06120 0.42 -0.8 626,917 - PGA1_c06120 0.50 +1.6 626,917 - PGA1_c06120 0.50 +0.0 626,919 + PGA1_c06120 0.50 +1.2 626,919 + PGA1_c06120 0.50 +4.4 626,969 - PGA1_c06120 0.54 +2.9 627,050 - PGA1_c06120 0.61 -0.4 627,115 - PGA1_c06120 0.66 +1.0 627,117 + PGA1_c06120 0.66 -0.1 627,178 + PGA1_c06120 0.71 +0.0 627,216 + PGA1_c06120 0.74 +0.1 627,234 + PGA1_c06120 0.76 +1.5 627,239 + PGA1_c06120 0.76 -2.4 627,242 - PGA1_c06120 0.76 +1.6 627,338 - PGA1_c06120 0.84 +0.0 627,420 - -1.6 627,455 + +0.9 627,463 - +1.5 627,470 + -2.8 627,470 + -0.2 627,470 + +2.3 627,478 - +0.4 627,504 + -2.2 627,536 + -1.4 627,544 - +1.8 627,551 - +3.2 627,567 - +0.8 627,590 + +1.6 627,625 - +1.6 627,663 - -2.3 627,689 - +1.6 627,691 + -1.2 627,691 + +0.3 627,691 + -1.0 627,694 - +1.6 627,701 + +0.0 627,701 + +0.4 627,709 - -1.0 627,720 - -0.4 627,722 + -1.2 627,777 + +3.9 627,785 - +1.6 627,811 + PGA1_c06130 0.12 +0.3 627,982 - PGA1_c06130 0.40 -0.4 627,992 + PGA1_c06130 0.41 -1.8 628,000 - PGA1_c06130 0.42 -1.7 628,013 + PGA1_c06130 0.44 +1.9 628,136 - PGA1_c06130 0.64 -2.3 628,136 - PGA1_c06130 0.64 -1.8 628,157 + PGA1_c06130 0.67 -0.4 628,268 + PGA1_c06130 0.85 -2.8 628,268 + PGA1_c06130 0.85 +1.9 628,291 - PGA1_c06130 0.89 -1.6 628,291 - PGA1_c06130 0.89 -0.4 628,323 + +2.3 628,331 - -0.4 628,331 - -1.0 628,331 - +0.0 628,333 + -1.4 628,413 + +0.7 628,476 - -1.2 628,508 - +0.6 628,518 + -1.4 628,553 - PGA1_c06140 0.12 -0.4 628,613 - PGA1_c06140 0.16 +1.4 628,680 + PGA1_c06140 0.21 +0.5 628,680 + PGA1_c06140 0.21 -0.8 628,688 - PGA1_c06140 0.21 +0.4 628,701 + PGA1_c06140 0.22 -0.5 628,709 - PGA1_c06140 0.23 +2.1 628,735 - PGA1_c06140 0.24 -1.6 628,759 + PGA1_c06140 0.26 +2.0 628,843 - PGA1_c06140 0.32 -0.4 628,863 + PGA1_c06140 0.33 +0.9 628,890 - PGA1_c06140 0.35 -1.6 628,910 - PGA1_c06140 0.36 -1.3 628,926 + PGA1_c06140 0.38 -1.3 629,016 - PGA1_c06140 0.44 -0.6 629,053 - PGA1_c06140 0.46 +0.0 629,099 - PGA1_c06140 0.49 +2.6 629,128 - PGA1_c06140 0.51 +1.0 629,189 + PGA1_c06140 0.56 -1.2 629,214 - PGA1_c06140 0.57 +3.1 629,311 - PGA1_c06140 0.64 +0.9 629,353 + PGA1_c06140 0.67 -2.5
Or see this region's nucleotide sequence