Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00600

Experiment: m.b. nitrite 8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00550 and PGA1_c00570 are separated by 4 nucleotidesPGA1_c00570 and PGA1_c00590 are separated by 41 nucleotidesPGA1_c00590 and PGA1_c00600 are separated by 57 nucleotidesPGA1_c00600 and PGA1_c00610 are separated by 37 nucleotidesPGA1_c00610 and PGA1_c00620 overlap by 4 nucleotides PGA1_c00550: PGA1_c00550 - putative cob(II)yrinic acid a,c-diamide reductase, at 58,650 to 59,291 _c00550 PGA1_c00570: PGA1_c00570 - 30S ribosomal protein S16, at 59,296 to 59,655 _c00570 PGA1_c00590: PGA1_c00590 - chorismate mutase, at 59,697 to 60,005 _c00590 PGA1_c00600: PGA1_c00600 - putative acetyltransferase, at 60,063 to 60,665 _c00600 PGA1_c00610: PGA1_c00610 - acetyltransferase, GNAT family, at 60,703 to 61,449 _c00610 PGA1_c00620: PGA1_c00620 - putative acetyltransferase, GNAT family, at 61,446 to 61,991 _c00620 Position (kb) 60 61Strain fitness (log2 ratio) -2 -1 0 1at 59.159 kb on + strand, within PGA1_c00550at 59.190 kb on - strand, within PGA1_c00550at 60.055 kb on - strandat 60.359 kb on - strand, within PGA1_c00600at 60.481 kb on - strand, within PGA1_c00600at 60.481 kb on - strand, within PGA1_c00600at 61.330 kb on - strand, within PGA1_c00610at 61.339 kb on - strand, within PGA1_c00610

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM
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59,159 + PGA1_c00550 0.79 -0.8
59,190 - PGA1_c00550 0.84 -2.5
60,055 - -2.7
60,359 - PGA1_c00600 0.49 -2.5
60,481 - PGA1_c00600 0.69 -0.7
60,481 - PGA1_c00600 0.69 -0.9
61,330 - PGA1_c00610 0.84 -1.9
61,339 - PGA1_c00610 0.85 -0.6

Or see this region's nucleotide sequence