Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05550 and PGA1_c05560 are separated by 623 nucleotides
PGA1_c05550: PGA1_c05550 - glutamine synthase-like protein, at 567,125 to 568,576
_c05550
PGA1_c05560: PGA1_c05560 - glycine cleavage system protein GcvH, at 569,200 to 569,562
_c05560
Position (kb) 569
570 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 568.242 kb on - strand, within PGA1_c05550 at 568.277 kb on + strand, within PGA1_c05550 at 568.321 kb on - strand, within PGA1_c05550 at 568.321 kb on - strand, within PGA1_c05550 at 568.418 kb on + strand, within PGA1_c05550 at 568.440 kb on - strand at 568.446 kb on - strand at 568.464 kb on + strand at 568.466 kb on + strand at 568.474 kb on + strand at 568.487 kb on + strand at 568.496 kb on - strand at 568.501 kb on + strand at 568.504 kb on - strand at 568.507 kb on + strand at 568.515 kb on - strand at 568.515 kb on - strand at 568.533 kb on + strand at 568.541 kb on - strand at 568.776 kb on + strand at 568.783 kb on + strand at 568.790 kb on - strand at 568.808 kb on + strand at 568.829 kb on + strand at 568.837 kb on - strand at 568.845 kb on + strand at 568.874 kb on - strand at 568.892 kb on + strand at 568.892 kb on + strand at 568.900 kb on - strand at 568.931 kb on + strand at 568.999 kb on - strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.049 kb on + strand at 569.049 kb on + strand at 569.052 kb on - strand at 569.054 kb on + strand at 569.057 kb on - strand at 569.068 kb on + strand at 569.073 kb on + strand at 569.076 kb on - strand at 569.081 kb on - strand at 569.147 kb on + strand at 569.324 kb on + strand, within PGA1_c05560 at 569.366 kb on - strand, within PGA1_c05560 at 569.375 kb on - strand, within PGA1_c05560 at 569.469 kb on - strand, within PGA1_c05560 at 569.490 kb on + strand, within PGA1_c05560 at 569.498 kb on - strand, within PGA1_c05560 at 569.506 kb on - strand, within PGA1_c05560 at 569.573 kb on - strand at 569.652 kb on - strand at 569.739 kb on - strand at 569.880 kb on - strand at 569.964 kb on + strand at 569.972 kb on - strand at 570.030 kb on - strand at 570.034 kb on + strand at 570.041 kb on + strand at 570.071 kb on + strand at 570.071 kb on + strand at 570.076 kb on - strand at 570.079 kb on - strand at 570.171 kb on + strand at 570.236 kb on + strand at 570.249 kb on - strand at 570.285 kb on - strand at 570.308 kb on - strand at 570.331 kb on - strand at 570.331 kb on - strand at 570.331 kb on - strand at 570.418 kb on - strand at 570.420 kb on - strand at 570.420 kb on - strand at 570.420 kb on - strand at 570.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 568,242 - PGA1_c05550 0.77 +0.5 568,277 + PGA1_c05550 0.79 +0.0 568,321 - PGA1_c05550 0.82 -1.5 568,321 - PGA1_c05550 0.82 +0.9 568,418 + PGA1_c05550 0.89 -1.5 568,440 - -2.2 568,446 - +1.1 568,464 + -2.0 568,466 + +0.5 568,474 + -1.5 568,487 + +0.5 568,496 - +1.0 568,501 + -0.7 568,504 - -1.2 568,507 + -1.0 568,515 - +1.2 568,515 - -1.0 568,533 + +1.2 568,541 - +2.0 568,776 + +0.4 568,783 + -1.0 568,790 - +0.2 568,808 + -2.6 568,829 + -1.6 568,837 - +0.1 568,845 + +1.2 568,874 - -0.4 568,892 + -2.2 568,892 + -3.2 568,900 - +1.0 568,931 + -1.0 568,999 - +1.0 569,044 + -1.7 569,044 + -1.0 569,044 + +3.7 569,044 + -0.6 569,049 + -1.5 569,049 + -2.2 569,052 - +0.7 569,054 + +0.6 569,057 - -1.2 569,068 + -0.5 569,073 + +0.2 569,076 - -1.2 569,081 - -1.5 569,147 + -1.4 569,324 + PGA1_c05560 0.34 -0.8 569,366 - PGA1_c05560 0.46 +0.2 569,375 - PGA1_c05560 0.48 +0.3 569,469 - PGA1_c05560 0.74 -3.1 569,490 + PGA1_c05560 0.80 -1.7 569,498 - PGA1_c05560 0.82 -2.2 569,506 - PGA1_c05560 0.84 -2.3 569,573 - -1.2 569,652 - -0.1 569,739 - -0.2 569,880 - +2.2 569,964 + -0.4 569,972 - -2.5 570,030 - +0.4 570,034 + -0.2 570,041 + +1.6 570,071 + +1.3 570,071 + +0.1 570,076 - -1.9 570,079 - -1.5 570,171 + -0.0 570,236 + -0.5 570,249 - -2.3 570,285 - +1.6 570,308 - -0.7 570,331 - +1.1 570,331 - +0.4 570,331 - +0.1 570,418 - -0.6 570,420 - +2.6 570,420 - +0.0 570,420 - +0.3 570,505 + +1.0
Or see this region's nucleotide sequence