Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00020

Experiment: m.b. nitrite 8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00010 and PGA1_78p00020 are separated by 107 nucleotidesPGA1_78p00020 and PGA1_78p00030 are separated by 9 nucleotides PGA1_78p00010: PGA1_78p00010 - putative replication initiation protein RepB, at 101 to 1,417 _78p00010 PGA1_78p00020: PGA1_78p00020 - putative ubiquinone biosynthesis protein, at 1,525 to 2,943 _78p00020 PGA1_78p00030: PGA1_78p00030 - putative multicopper oxidase, at 2,953 to 4,410 _78p00030 Position (kb) 1 2 3Strain fitness (log2 ratio) -1 0 1 2 3at 1.442 kb on - strandat 2.156 kb on - strand, within PGA1_78p00020at 2.786 kb on + strand, within PGA1_78p00020at 2.929 kb on - strandat 3.036 kb on - strandat 3.564 kb on - strand, within PGA1_78p00030at 3.572 kb on + strand, within PGA1_78p00030at 3.815 kb on + strand, within PGA1_78p00030

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM
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1,442 - +0.9
2,156 - PGA1_78p00020 0.44 +0.9
2,786 + PGA1_78p00020 0.89 +0.4
2,929 - -0.1
3,036 - +2.9
3,564 - PGA1_78p00030 0.42 -1.7
3,572 + PGA1_78p00030 0.42 -0.7
3,815 + PGA1_78p00030 0.59 +0.9

Or see this region's nucleotide sequence