Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01790 and PGA1_262p01800 overlap by 4 nucleotides PGA1_262p01800 and PGA1_262p01810 are separated by 14 nucleotides PGA1_262p01810 and PGA1_262p01820 overlap by 4 nucleotides
PGA1_262p01790: PGA1_262p01790 - aldehyde dehydrogenase, at 196,111 to 197,562
_262p01790
PGA1_262p01800: PGA1_262p01800 - putative membrane dipeptidase, at 197,559 to 198,536
_262p01800
PGA1_262p01810: PGA1_262p01810 - hypothetical protein, at 198,551 to 200,254
_262p01810
PGA1_262p01820: PGA1_262p01820 - Protein of unknown function (DUF3726)., at 200,251 to 200,901
_262p01820
Position (kb) 198
199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 197.576 kb on + strand at 197.730 kb on - strand, within PGA1_262p01800 at 197.730 kb on - strand, within PGA1_262p01800 at 197.813 kb on + strand, within PGA1_262p01800 at 198.074 kb on + strand, within PGA1_262p01800 at 198.074 kb on + strand, within PGA1_262p01800 at 198.082 kb on - strand, within PGA1_262p01800 at 198.089 kb on - strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.274 kb on + strand, within PGA1_262p01800 at 198.279 kb on + strand, within PGA1_262p01800 at 198.362 kb on - strand, within PGA1_262p01800 at 198.448 kb on + strand at 198.456 kb on - strand at 198.470 kb on + strand at 198.479 kb on + strand at 198.479 kb on + strand at 198.525 kb on + strand at 198.555 kb on - strand at 198.604 kb on + strand at 198.612 kb on - strand at 198.639 kb on + strand at 198.652 kb on - strand at 198.762 kb on + strand, within PGA1_262p01810 at 198.770 kb on - strand, within PGA1_262p01810 at 198.770 kb on - strand, within PGA1_262p01810 at 198.777 kb on + strand, within PGA1_262p01810 at 198.850 kb on - strand, within PGA1_262p01810 at 198.905 kb on + strand, within PGA1_262p01810 at 198.922 kb on + strand, within PGA1_262p01810 at 199.230 kb on - strand, within PGA1_262p01810 at 199.280 kb on - strand, within PGA1_262p01810 at 199.280 kb on - strand, within PGA1_262p01810 at 199.280 kb on - strand, within PGA1_262p01810 at 199.440 kb on - strand, within PGA1_262p01810 at 199.475 kb on + strand, within PGA1_262p01810 at 199.478 kb on - strand, within PGA1_262p01810 at 199.484 kb on - strand, within PGA1_262p01810 at 199.488 kb on - strand, within PGA1_262p01810 at 199.541 kb on + strand, within PGA1_262p01810 at 199.541 kb on + strand, within PGA1_262p01810 at 199.544 kb on - strand, within PGA1_262p01810 at 199.586 kb on - strand, within PGA1_262p01810 at 199.791 kb on + strand, within PGA1_262p01810 at 199.962 kb on + strand, within PGA1_262p01810 at 200.067 kb on + strand, within PGA1_262p01810 at 200.067 kb on + strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.081 kb on + strand, within PGA1_262p01810 at 200.185 kb on + strand at 200.308 kb on + strand at 200.313 kb on + strand at 200.321 kb on - strand, within PGA1_262p01820 at 200.418 kb on + strand, within PGA1_262p01820 at 200.433 kb on + strand, within PGA1_262p01820 at 200.737 kb on - strand, within PGA1_262p01820 at 200.761 kb on + strand, within PGA1_262p01820 at 200.761 kb on + strand, within PGA1_262p01820 at 200.773 kb on + strand, within PGA1_262p01820 at 200.786 kb on - strand, within PGA1_262p01820 at 200.872 kb on - strand at 200.905 kb on + strand at 200.905 kb on + strand at 200.905 kb on + strand at 200.913 kb on - strand at 200.918 kb on - strand at 200.923 kb on + strand at 200.977 kb on + strand at 200.977 kb on + strand at 200.977 kb on + strand at 200.985 kb on - strand at 200.985 kb on - strand at 200.985 kb on - strand at 200.992 kb on + strand at 200.999 kb on + strand at 201.073 kb on + strand at 201.074 kb on - strand at 201.074 kb on - strand at 201.081 kb on - strand at 201.082 kb on - strand at 201.112 kb on - strand at 201.135 kb on + strand at 201.181 kb on + strand at 201.254 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 197,576 + -3.2 197,730 - PGA1_262p01800 0.17 +1.1 197,730 - PGA1_262p01800 0.17 -0.1 197,813 + PGA1_262p01800 0.26 +1.1 198,074 + PGA1_262p01800 0.53 -0.5 198,074 + PGA1_262p01800 0.53 -1.6 198,082 - PGA1_262p01800 0.53 +0.4 198,089 - PGA1_262p01800 0.54 +1.0 198,240 + PGA1_262p01800 0.70 +0.5 198,240 + PGA1_262p01800 0.70 +0.4 198,240 + PGA1_262p01800 0.70 -0.9 198,274 + PGA1_262p01800 0.73 +0.5 198,279 + PGA1_262p01800 0.74 -0.3 198,362 - PGA1_262p01800 0.82 +0.2 198,448 + +1.0 198,456 - -1.3 198,470 + -0.9 198,479 + -0.8 198,479 + -0.7 198,525 + -0.4 198,555 - -2.0 198,604 + +1.7 198,612 - -1.4 198,639 + +0.9 198,652 - +1.2 198,762 + PGA1_262p01810 0.12 +0.6 198,770 - PGA1_262p01810 0.13 +1.8 198,770 - PGA1_262p01810 0.13 +2.4 198,777 + PGA1_262p01810 0.13 -0.6 198,850 - PGA1_262p01810 0.18 +2.7 198,905 + PGA1_262p01810 0.21 +0.1 198,922 + PGA1_262p01810 0.22 -0.3 199,230 - PGA1_262p01810 0.40 +1.9 199,280 - PGA1_262p01810 0.43 -1.8 199,280 - PGA1_262p01810 0.43 +1.7 199,280 - PGA1_262p01810 0.43 +0.4 199,440 - PGA1_262p01810 0.52 +0.3 199,475 + PGA1_262p01810 0.54 +1.1 199,478 - PGA1_262p01810 0.54 +0.0 199,484 - PGA1_262p01810 0.55 +1.2 199,488 - PGA1_262p01810 0.55 -1.8 199,541 + PGA1_262p01810 0.58 -0.0 199,541 + PGA1_262p01810 0.58 -0.6 199,544 - PGA1_262p01810 0.58 +0.9 199,586 - PGA1_262p01810 0.61 +1.0 199,791 + PGA1_262p01810 0.73 +0.8 199,962 + PGA1_262p01810 0.83 -0.3 200,067 + PGA1_262p01810 0.89 +2.4 200,067 + PGA1_262p01810 0.89 -0.1 200,075 - PGA1_262p01810 0.89 +4.0 200,075 - PGA1_262p01810 0.89 +1.6 200,075 - PGA1_262p01810 0.89 -1.2 200,075 - PGA1_262p01810 0.89 -3.5 200,075 - PGA1_262p01810 0.89 -2.0 200,075 - PGA1_262p01810 0.89 +1.1 200,081 + PGA1_262p01810 0.90 +0.4 200,185 + -0.4 200,308 + +0.3 200,313 + +2.9 200,321 - PGA1_262p01820 0.11 -0.8 200,418 + PGA1_262p01820 0.26 -2.5 200,433 + PGA1_262p01820 0.28 +0.3 200,737 - PGA1_262p01820 0.75 +0.2 200,761 + PGA1_262p01820 0.78 -0.5 200,761 + PGA1_262p01820 0.78 +3.3 200,773 + PGA1_262p01820 0.80 +1.0 200,786 - PGA1_262p01820 0.82 +1.9 200,872 - +0.2 200,905 + +0.6 200,905 + -1.3 200,905 + -0.6 200,913 - +0.5 200,918 - -0.1 200,923 + +0.1 200,977 + +2.1 200,977 + +2.9 200,977 + -0.7 200,985 - +0.7 200,985 - -1.8 200,985 - -2.3 200,992 + +1.5 200,999 + +2.5 201,073 + +1.0 201,074 - -1.3 201,074 - -2.7 201,081 - +1.4 201,082 - -0.7 201,112 - +1.4 201,135 + +1.5 201,181 + -0.8 201,254 + +0.1
Or see this region's nucleotide sequence