Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01410 and PGA1_262p01420 are separated by 631 nucleotides PGA1_262p01420 and PGA1_262p01430 overlap by 4 nucleotides
PGA1_262p01410: PGA1_262p01410 - malate/L-lactate dehydrogenase-like protein, at 152,967 to 153,404
_262p01410
PGA1_262p01420: PGA1_262p01420 - Protein of unknown function (DUF3726)., at 154,036 to 154,686
_262p01420
PGA1_262p01430: PGA1_262p01430 - hypothetical protein, at 154,683 to 156,374
_262p01430
Position (kb) 154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 153.193 kb on + strand, within PGA1_262p01410 at 153.201 kb on - strand, within PGA1_262p01410 at 153.342 kb on - strand, within PGA1_262p01410 at 153.367 kb on - strand at 153.369 kb on - strand at 153.648 kb on - strand at 153.691 kb on - strand at 153.749 kb on - strand at 153.749 kb on - strand at 153.949 kb on + strand at 154.006 kb on - strand at 154.110 kb on + strand, within PGA1_262p01420 at 154.469 kb on + strand, within PGA1_262p01420 at 154.697 kb on + strand at 154.743 kb on - strand at 154.839 kb on + strand at 154.995 kb on + strand, within PGA1_262p01430 at 155.002 kb on + strand, within PGA1_262p01430 at 155.171 kb on + strand, within PGA1_262p01430 at 155.174 kb on - strand, within PGA1_262p01430 at 155.174 kb on - strand, within PGA1_262p01430 at 155.261 kb on - strand, within PGA1_262p01430 at 155.316 kb on - strand, within PGA1_262p01430 at 155.350 kb on + strand, within PGA1_262p01430 at 155.369 kb on + strand, within PGA1_262p01430 at 155.377 kb on - strand, within PGA1_262p01430 at 155.479 kb on - strand, within PGA1_262p01430 at 155.509 kb on + strand, within PGA1_262p01430 at 155.517 kb on - strand, within PGA1_262p01430 at 155.527 kb on - strand, within PGA1_262p01430 at 155.678 kb on - strand, within PGA1_262p01430
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 153,193 + PGA1_262p01410 0.52 -1.4 153,201 - PGA1_262p01410 0.53 -0.6 153,342 - PGA1_262p01410 0.86 -2.0 153,367 - -0.2 153,369 - +2.1 153,648 - +0.4 153,691 - -1.1 153,749 - -2.5 153,749 - -1.4 153,949 + +0.7 154,006 - -2.1 154,110 + PGA1_262p01420 0.11 -1.3 154,469 + PGA1_262p01420 0.67 +0.2 154,697 + -3.0 154,743 - -0.9 154,839 + -3.3 154,995 + PGA1_262p01430 0.18 -2.1 155,002 + PGA1_262p01430 0.19 +0.0 155,171 + PGA1_262p01430 0.29 -1.4 155,174 - PGA1_262p01430 0.29 -0.7 155,174 - PGA1_262p01430 0.29 -2.0 155,261 - PGA1_262p01430 0.34 -0.0 155,316 - PGA1_262p01430 0.37 -0.1 155,350 + PGA1_262p01430 0.39 -2.0 155,369 + PGA1_262p01430 0.41 -3.0 155,377 - PGA1_262p01430 0.41 +0.6 155,479 - PGA1_262p01430 0.47 -0.1 155,509 + PGA1_262p01430 0.49 -2.1 155,517 - PGA1_262p01430 0.49 +1.2 155,527 - PGA1_262p01430 0.50 -2.0 155,678 - PGA1_262p01430 0.59 -2.4
Or see this region's nucleotide sequence