Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01260 and PGA1_262p01270 are separated by 37 nucleotides PGA1_262p01270 and PGA1_262p01280 are separated by 2 nucleotides PGA1_262p01280 and PGA1_262p01290 are separated by 97 nucleotides
PGA1_262p01260: PGA1_262p01260 - copper-containing nitrite reductase NirK, at 137,242 to 138,465
_262p01260
PGA1_262p01270: PGA1_262p01270 - Uncharacterized conserved protein, at 138,503 to 139,261
_262p01270
PGA1_262p01280: PGA1_262p01280 - transcriptional regulator, TetR family, at 139,264 to 139,872
_262p01280
PGA1_262p01290: PGA1_262p01290 - transcriptional regulator, AraC family, at 139,970 to 140,977
_262p01290
Position (kb) 139
140 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 138.344 kb on + strand at 138.383 kb on - strand at 138.827 kb on - strand, within PGA1_262p01270 at 138.827 kb on - strand, within PGA1_262p01270 at 138.850 kb on - strand, within PGA1_262p01270 at 139.092 kb on - strand, within PGA1_262p01270 at 139.151 kb on + strand, within PGA1_262p01270 at 139.579 kb on + strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.770 kb on - strand, within PGA1_262p01280 at 140.074 kb on - strand, within PGA1_262p01290 at 140.079 kb on - strand, within PGA1_262p01290 at 140.152 kb on + strand, within PGA1_262p01290 at 140.215 kb on - strand, within PGA1_262p01290 at 140.215 kb on - strand, within PGA1_262p01290 at 140.446 kb on + strand, within PGA1_262p01290 at 140.454 kb on - strand, within PGA1_262p01290 at 140.533 kb on - strand, within PGA1_262p01290 at 140.620 kb on - strand, within PGA1_262p01290 at 140.637 kb on + strand, within PGA1_262p01290 at 140.647 kb on + strand, within PGA1_262p01290
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 138,344 + -1.9 138,383 - -2.5 138,827 - PGA1_262p01270 0.43 +1.1 138,827 - PGA1_262p01270 0.43 +1.4 138,850 - PGA1_262p01270 0.46 -1.4 139,092 - PGA1_262p01270 0.78 +0.4 139,151 + PGA1_262p01270 0.85 -0.4 139,579 + PGA1_262p01280 0.52 -1.4 139,734 - PGA1_262p01280 0.77 -3.0 139,734 - PGA1_262p01280 0.77 -2.0 139,734 - PGA1_262p01280 0.77 -1.1 139,770 - PGA1_262p01280 0.83 +1.5 140,074 - PGA1_262p01290 0.10 -0.0 140,079 - PGA1_262p01290 0.11 -2.6 140,152 + PGA1_262p01290 0.18 +1.3 140,215 - PGA1_262p01290 0.24 +0.4 140,215 - PGA1_262p01290 0.24 -0.7 140,446 + PGA1_262p01290 0.47 -3.3 140,454 - PGA1_262p01290 0.48 -1.5 140,533 - PGA1_262p01290 0.56 +0.4 140,620 - PGA1_262p01290 0.64 -2.8 140,637 + PGA1_262p01290 0.66 -0.8 140,647 + PGA1_262p01290 0.67 +2.8
Or see this region's nucleotide sequence