Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00540 and PGA1_262p00550 are separated by 169 nucleotides PGA1_262p00550 and PGA1_262p00560 overlap by 1 nucleotides
PGA1_262p00540: PGA1_262p00540 - succinate-semialdehyde dehdyrogenase GabD, at 62,228 to 63,607
_262p00540
PGA1_262p00550: PGA1_262p00550 - putative DNA modification/repair radical SAM protein, at 63,777 to 65,033
_262p00550
PGA1_262p00560: PGA1_262p00560 - uracil DNA glycosylase-like protein, at 65,033 to 66,478
_262p00560
Position (kb) 63
64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 62.852 kb on + strand, within PGA1_262p00540 at 62.860 kb on - strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 63.015 kb on - strand, within PGA1_262p00540 at 63.054 kb on + strand, within PGA1_262p00540 at 63.124 kb on + strand, within PGA1_262p00540 at 63.172 kb on + strand, within PGA1_262p00540 at 63.182 kb on + strand, within PGA1_262p00540 at 63.190 kb on - strand, within PGA1_262p00540 at 63.206 kb on + strand, within PGA1_262p00540 at 63.284 kb on - strand, within PGA1_262p00540 at 63.409 kb on + strand, within PGA1_262p00540 at 63.425 kb on + strand, within PGA1_262p00540 at 63.517 kb on - strand at 63.547 kb on + strand at 63.602 kb on + strand at 63.629 kb on + strand at 63.655 kb on + strand at 63.819 kb on - strand at 63.916 kb on + strand, within PGA1_262p00550 at 64.240 kb on - strand, within PGA1_262p00550 at 64.342 kb on - strand, within PGA1_262p00550 at 64.376 kb on + strand, within PGA1_262p00550 at 64.475 kb on + strand, within PGA1_262p00550 at 64.592 kb on - strand, within PGA1_262p00550 at 64.654 kb on - strand, within PGA1_262p00550 at 64.793 kb on - strand, within PGA1_262p00550 at 64.793 kb on - strand, within PGA1_262p00550 at 64.856 kb on + strand, within PGA1_262p00550 at 64.986 kb on - strand at 65.069 kb on - strand at 65.074 kb on - strand at 65.087 kb on + strand at 65.173 kb on + strand at 65.175 kb on + strand at 65.486 kb on - strand, within PGA1_262p00560 at 65.527 kb on - strand, within PGA1_262p00560 at 65.596 kb on + strand, within PGA1_262p00560 at 65.619 kb on - strand, within PGA1_262p00560 at 65.681 kb on + strand, within PGA1_262p00560 at 66.019 kb on - strand, within PGA1_262p00560
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 62,852 + PGA1_262p00540 0.45 +1.2 62,860 - PGA1_262p00540 0.46 +0.5 62,989 + PGA1_262p00540 0.55 +2.8 62,989 + PGA1_262p00540 0.55 -3.0 62,989 + PGA1_262p00540 0.55 -1.6 62,989 + PGA1_262p00540 0.55 -0.8 62,989 + PGA1_262p00540 0.55 +0.4 62,997 - PGA1_262p00540 0.56 +3.0 62,997 - PGA1_262p00540 0.56 -2.4 62,997 - PGA1_262p00540 0.56 +0.0 63,015 - PGA1_262p00540 0.57 +2.4 63,054 + PGA1_262p00540 0.60 +0.8 63,124 + PGA1_262p00540 0.65 +1.0 63,172 + PGA1_262p00540 0.68 +0.7 63,182 + PGA1_262p00540 0.69 +0.2 63,190 - PGA1_262p00540 0.70 +0.1 63,206 + PGA1_262p00540 0.71 -1.1 63,284 - PGA1_262p00540 0.77 +0.0 63,409 + PGA1_262p00540 0.86 +1.2 63,425 + PGA1_262p00540 0.87 -1.1 63,517 - -3.1 63,547 + -1.4 63,602 + -0.4 63,629 + +0.5 63,655 + +0.0 63,819 - -0.4 63,916 + PGA1_262p00550 0.11 -1.4 64,240 - PGA1_262p00550 0.37 +0.7 64,342 - PGA1_262p00550 0.45 +0.6 64,376 + PGA1_262p00550 0.48 +1.0 64,475 + PGA1_262p00550 0.56 -0.1 64,592 - PGA1_262p00550 0.65 -3.3 64,654 - PGA1_262p00550 0.70 +2.1 64,793 - PGA1_262p00550 0.81 +0.9 64,793 - PGA1_262p00550 0.81 -1.9 64,856 + PGA1_262p00550 0.86 +1.2 64,986 - +1.0 65,069 - -0.3 65,074 - -3.1 65,087 + +0.8 65,173 + -1.0 65,175 + -1.2 65,486 - PGA1_262p00560 0.31 -2.4 65,527 - PGA1_262p00560 0.34 +1.5 65,596 + PGA1_262p00560 0.39 +1.2 65,619 - PGA1_262p00560 0.41 -2.9 65,681 + PGA1_262p00560 0.45 +1.9 66,019 - PGA1_262p00560 0.68 -1.4
Or see this region's nucleotide sequence