Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00460 and PGA1_262p00470 are separated by 0 nucleotides PGA1_262p00470 and PGA1_262p00480 overlap by 17 nucleotides PGA1_262p00480 and PGA1_262p00490 are separated by 38 nucleotides PGA1_262p00490 and PGA1_262p00500 are separated by 77 nucleotides
PGA1_262p00460: PGA1_262p00460 - transcriptional regulator, MerR family, at 55,174 to 55,602
_262p00460
PGA1_262p00470: PGA1_262p00470 - Plasmid stabilization system protein, at 55,603 to 55,971
_262p00470
PGA1_262p00480: PGA1_262p00480 - putative addiction module antidote protein, CC2985 family, at 55,955 to 56,230
_262p00480
PGA1_262p00490: PGA1_262p00490 - hypothetical protein, at 56,269 to 56,991
_262p00490
PGA1_262p00500: PGA1_262p00500 - putative ATP dependent DNA ligase, at 57,069 to 58,625
_262p00500
Position (kb) 56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 55.303 kb on + strand, within PGA1_262p00460 at 55.308 kb on + strand, within PGA1_262p00460 at 55.475 kb on - strand, within PGA1_262p00460 at 55.482 kb on - strand, within PGA1_262p00460 at 55.657 kb on - strand, within PGA1_262p00470 at 55.699 kb on + strand, within PGA1_262p00470 at 55.709 kb on + strand, within PGA1_262p00470 at 55.802 kb on - strand, within PGA1_262p00470 at 55.851 kb on - strand, within PGA1_262p00470 at 56.321 kb on - strand at 56.321 kb on - strand at 56.662 kb on + strand, within PGA1_262p00490 at 56.760 kb on + strand, within PGA1_262p00490 at 56.863 kb on + strand, within PGA1_262p00490 at 56.884 kb on + strand, within PGA1_262p00490 at 56.955 kb on + strand at 56.961 kb on + strand at 56.961 kb on + strand at 56.963 kb on - strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.969 kb on - strand at 56.969 kb on - strand at 56.974 kb on - strand at 57.024 kb on + strand at 57.057 kb on + strand at 57.065 kb on - strand at 57.065 kb on - strand at 57.095 kb on + strand at 57.245 kb on - strand, within PGA1_262p00500 at 57.296 kb on - strand, within PGA1_262p00500 at 57.296 kb on - strand, within PGA1_262p00500 at 57.331 kb on + strand, within PGA1_262p00500 at 57.331 kb on + strand, within PGA1_262p00500 at 57.339 kb on - strand, within PGA1_262p00500 at 57.376 kb on - strand, within PGA1_262p00500 at 57.390 kb on - strand, within PGA1_262p00500 at 57.531 kb on + strand, within PGA1_262p00500 at 57.560 kb on + strand, within PGA1_262p00500 at 57.571 kb on + strand, within PGA1_262p00500 at 57.579 kb on - strand, within PGA1_262p00500 at 57.693 kb on - strand, within PGA1_262p00500 at 57.871 kb on + strand, within PGA1_262p00500 at 57.879 kb on - strand, within PGA1_262p00500
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 55,303 + PGA1_262p00460 0.30 -0.4 55,308 + PGA1_262p00460 0.31 +0.9 55,475 - PGA1_262p00460 0.70 -1.1 55,482 - PGA1_262p00460 0.72 -2.4 55,657 - PGA1_262p00470 0.15 +1.6 55,699 + PGA1_262p00470 0.26 -1.6 55,709 + PGA1_262p00470 0.29 -0.9 55,802 - PGA1_262p00470 0.54 +1.5 55,851 - PGA1_262p00470 0.67 +0.6 56,321 - +0.5 56,321 - -0.1 56,662 + PGA1_262p00490 0.54 -2.4 56,760 + PGA1_262p00490 0.68 -1.1 56,863 + PGA1_262p00490 0.82 -3.2 56,884 + PGA1_262p00490 0.85 +0.9 56,955 + +3.0 56,961 + -0.0 56,961 + +0.8 56,963 - -1.5 56,966 + +0.8 56,966 + +0.3 56,966 + -2.3 56,966 + -1.2 56,969 - -0.1 56,969 - +1.0 56,974 - +1.2 57,024 + -0.4 57,057 + +1.0 57,065 - +0.1 57,065 - +0.0 57,095 + +0.4 57,245 - PGA1_262p00500 0.11 +1.9 57,296 - PGA1_262p00500 0.15 +0.6 57,296 - PGA1_262p00500 0.15 +1.7 57,331 + PGA1_262p00500 0.17 +0.8 57,331 + PGA1_262p00500 0.17 -1.1 57,339 - PGA1_262p00500 0.17 +0.3 57,376 - PGA1_262p00500 0.20 -0.1 57,390 - PGA1_262p00500 0.21 -3.0 57,531 + PGA1_262p00500 0.30 -2.5 57,560 + PGA1_262p00500 0.32 +1.3 57,571 + PGA1_262p00500 0.32 -0.6 57,579 - PGA1_262p00500 0.33 -0.2 57,693 - PGA1_262p00500 0.40 +1.8 57,871 + PGA1_262p00500 0.52 +0.5 57,879 - PGA1_262p00500 0.52 +2.2
Or see this region's nucleotide sequence