Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00380 and PGA1_262p00390 are separated by 353 nucleotides PGA1_262p00390 and PGA1_262p00400 overlap by 8 nucleotides
PGA1_262p00380: PGA1_262p00380 - sugar transferase, at 45,428 to 46,111
_262p00380
PGA1_262p00390: PGA1_262p00390 - aldose 1-epimerase, at 46,465 to 47,523
_262p00390
PGA1_262p00400: PGA1_262p00400 - putative cytochrome c peroxidase, at 47,516 to 48,868
_262p00400
Position (kb) 46
47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 45.535 kb on + strand, within PGA1_262p00380 at 45.543 kb on - strand, within PGA1_262p00380 at 45.565 kb on - strand, within PGA1_262p00380 at 45.608 kb on - strand, within PGA1_262p00380 at 45.769 kb on + strand, within PGA1_262p00380 at 45.788 kb on + strand, within PGA1_262p00380 at 45.796 kb on - strand, within PGA1_262p00380 at 45.881 kb on + strand, within PGA1_262p00380 at 45.890 kb on - strand, within PGA1_262p00380 at 46.146 kb on - strand at 46.149 kb on + strand at 46.254 kb on - strand at 46.290 kb on - strand at 46.290 kb on - strand at 46.308 kb on - strand at 46.318 kb on + strand at 46.431 kb on - strand at 46.432 kb on - strand at 46.460 kb on - strand at 46.518 kb on + strand at 46.666 kb on - strand, within PGA1_262p00390 at 46.763 kb on + strand, within PGA1_262p00390 at 46.808 kb on - strand, within PGA1_262p00390 at 46.869 kb on + strand, within PGA1_262p00390 at 46.872 kb on + strand, within PGA1_262p00390 at 46.966 kb on - strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.976 kb on + strand, within PGA1_262p00390 at 47.066 kb on + strand, within PGA1_262p00390 at 47.329 kb on + strand, within PGA1_262p00390 at 47.329 kb on + strand, within PGA1_262p00390 at 47.329 kb on + strand, within PGA1_262p00390 at 47.337 kb on - strand, within PGA1_262p00390 at 47.406 kb on + strand, within PGA1_262p00390 at 47.555 kb on + strand at 47.573 kb on - strand at 47.573 kb on - strand at 47.596 kb on - strand at 47.681 kb on - strand, within PGA1_262p00400 at 47.739 kb on + strand, within PGA1_262p00400 at 47.762 kb on + strand, within PGA1_262p00400 at 47.771 kb on + strand, within PGA1_262p00400 at 47.881 kb on - strand, within PGA1_262p00400 at 48.265 kb on - strand, within PGA1_262p00400 at 48.426 kb on - strand, within PGA1_262p00400
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 45,535 + PGA1_262p00380 0.16 -0.4 45,543 - PGA1_262p00380 0.17 +1.0 45,565 - PGA1_262p00380 0.20 +0.5 45,608 - PGA1_262p00380 0.26 -0.4 45,769 + PGA1_262p00380 0.50 -0.0 45,788 + PGA1_262p00380 0.53 -3.0 45,796 - PGA1_262p00380 0.54 -1.0 45,881 + PGA1_262p00380 0.66 -0.3 45,890 - PGA1_262p00380 0.68 +0.2 46,146 - -0.5 46,149 + +0.4 46,254 - +0.4 46,290 - -2.0 46,290 - +0.7 46,308 - +0.2 46,318 + +0.2 46,431 - -0.6 46,432 - +0.5 46,460 - +0.3 46,518 + +0.9 46,666 - PGA1_262p00390 0.19 +1.2 46,763 + PGA1_262p00390 0.28 +0.6 46,808 - PGA1_262p00390 0.32 +1.4 46,869 + PGA1_262p00390 0.38 +2.2 46,872 + PGA1_262p00390 0.38 -2.5 46,966 - PGA1_262p00390 0.47 +2.1 46,971 + PGA1_262p00390 0.48 +1.0 46,971 + PGA1_262p00390 0.48 +0.7 46,971 + PGA1_262p00390 0.48 -0.9 46,976 + PGA1_262p00390 0.48 +0.5 47,066 + PGA1_262p00390 0.57 +0.9 47,329 + PGA1_262p00390 0.82 -2.5 47,329 + PGA1_262p00390 0.82 +0.2 47,329 + PGA1_262p00390 0.82 +1.4 47,337 - PGA1_262p00390 0.82 +0.2 47,406 + PGA1_262p00390 0.89 -1.8 47,555 + -0.7 47,573 - -0.9 47,573 - +0.4 47,596 - +1.2 47,681 - PGA1_262p00400 0.12 -0.2 47,739 + PGA1_262p00400 0.16 -0.6 47,762 + PGA1_262p00400 0.18 +1.3 47,771 + PGA1_262p00400 0.19 -3.1 47,881 - PGA1_262p00400 0.27 -1.1 48,265 - PGA1_262p00400 0.55 +1.7 48,426 - PGA1_262p00400 0.67 -2.4
Or see this region's nucleotide sequence