Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03630 and PGA1_c03640 are separated by 337 nucleotides PGA1_c03640 and PGA1_c03650 are separated by 104 nucleotides PGA1_c03650 and PGA1_c03660 are separated by 163 nucleotides
PGA1_c03630: PGA1_c03630 - succinyl-CoA ligase [ADP-forming] subunit beta, at 350,241 to 351,434
_c03630
PGA1_c03640: PGA1_c03640 - Predicted ATPase, at 351,772 to 352,320
_c03640
PGA1_c03650: PGA1_c03650 - malate dehydrogenase Mdh, at 352,425 to 353,387
_c03650
PGA1_c03660: PGA1_c03660 - Predicted permeases, at 353,551 to 354,306
_c03660
Position (kb) 352
353
354 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 351.635 kb on - strand at 351.635 kb on - strand at 351.638 kb on + strand at 351.638 kb on + strand at 351.638 kb on + strand at 351.638 kb on + strand at 351.638 kb on + strand at 351.638 kb on + strand at 351.638 kb on + strand at 351.646 kb on - strand at 351.646 kb on - strand at 351.646 kb on - strand at 351.646 kb on - strand at 351.646 kb on - strand at 351.646 kb on - strand at 351.646 kb on - strand at 351.648 kb on + strand at 351.672 kb on - strand at 351.697 kb on - strand at 351.704 kb on + strand at 351.746 kb on + strand at 351.754 kb on - strand at 351.756 kb on + strand at 351.764 kb on - strand at 351.783 kb on + strand at 351.791 kb on - strand at 351.791 kb on - strand at 351.860 kb on - strand, within PGA1_c03640 at 351.882 kb on - strand, within PGA1_c03640 at 351.936 kb on - strand, within PGA1_c03640 at 351.973 kb on + strand, within PGA1_c03640 at 351.988 kb on + strand, within PGA1_c03640 at 351.996 kb on - strand, within PGA1_c03640 at 351.999 kb on + strand, within PGA1_c03640 at 352.006 kb on + strand, within PGA1_c03640 at 352.094 kb on + strand, within PGA1_c03640 at 352.094 kb on + strand, within PGA1_c03640 at 352.094 kb on + strand, within PGA1_c03640 at 352.094 kb on + strand, within PGA1_c03640 at 352.094 kb on + strand, within PGA1_c03640 at 352.094 kb on + strand, within PGA1_c03640 at 352.102 kb on - strand, within PGA1_c03640 at 352.115 kb on + strand, within PGA1_c03640 at 352.171 kb on - strand, within PGA1_c03640 at 352.184 kb on + strand, within PGA1_c03640 at 352.184 kb on + strand, within PGA1_c03640 at 352.192 kb on - strand, within PGA1_c03640 at 352.203 kb on + strand, within PGA1_c03640 at 352.204 kb on + strand, within PGA1_c03640 at 352.208 kb on + strand, within PGA1_c03640 at 352.266 kb on + strand at 352.313 kb on - strand at 352.327 kb on + strand at 352.375 kb on - strand at 352.385 kb on + strand at 352.419 kb on - strand at 352.419 kb on - strand at 352.419 kb on - strand at 352.419 kb on - strand at 352.424 kb on - strand at 352.440 kb on + strand at 353.354 kb on - strand at 353.433 kb on - strand at 353.465 kb on + strand at 353.470 kb on + strand at 353.477 kb on + strand at 353.479 kb on + strand at 353.487 kb on - strand at 353.487 kb on - strand at 353.489 kb on + strand at 353.489 kb on + strand at 353.489 kb on + strand at 353.495 kb on - strand at 353.497 kb on - strand at 353.497 kb on - strand at 353.497 kb on - strand at 353.497 kb on - strand at 353.498 kb on + strand at 353.498 kb on + strand at 353.498 kb on + strand at 353.506 kb on - strand at 353.506 kb on - strand at 353.566 kb on - strand at 353.600 kb on + strand at 353.632 kb on - strand, within PGA1_c03660 at 353.635 kb on + strand, within PGA1_c03660 at 353.635 kb on + strand, within PGA1_c03660 at 353.686 kb on - strand, within PGA1_c03660 at 353.695 kb on + strand, within PGA1_c03660 at 353.695 kb on + strand, within PGA1_c03660 at 353.701 kb on + strand, within PGA1_c03660 at 353.718 kb on - strand, within PGA1_c03660 at 353.745 kb on + strand, within PGA1_c03660 at 353.750 kb on - strand, within PGA1_c03660 at 353.750 kb on - strand, within PGA1_c03660 at 353.788 kb on - strand, within PGA1_c03660 at 353.810 kb on + strand, within PGA1_c03660 at 353.829 kb on - strand, within PGA1_c03660 at 353.844 kb on - strand, within PGA1_c03660 at 353.848 kb on + strand, within PGA1_c03660 at 353.901 kb on + strand, within PGA1_c03660 at 353.901 kb on + strand, within PGA1_c03660 at 353.918 kb on - strand, within PGA1_c03660 at 353.928 kb on - strand, within PGA1_c03660 at 354.023 kb on + strand, within PGA1_c03660 at 354.067 kb on + strand, within PGA1_c03660 at 354.067 kb on + strand, within PGA1_c03660 at 354.075 kb on - strand, within PGA1_c03660 at 354.076 kb on + strand, within PGA1_c03660 at 354.093 kb on + strand, within PGA1_c03660 at 354.131 kb on + strand, within PGA1_c03660 at 354.168 kb on - strand, within PGA1_c03660 at 354.175 kb on + strand, within PGA1_c03660 at 354.176 kb on + strand, within PGA1_c03660 at 354.176 kb on + strand, within PGA1_c03660 at 354.184 kb on - strand, within PGA1_c03660 at 354.186 kb on + strand, within PGA1_c03660 at 354.186 kb on + strand, within PGA1_c03660 at 354.194 kb on - strand, within PGA1_c03660 at 354.194 kb on - strand, within PGA1_c03660 at 354.221 kb on + strand, within PGA1_c03660 at 354.222 kb on - strand, within PGA1_c03660 at 354.222 kb on - strand, within PGA1_c03660 at 354.229 kb on - strand, within PGA1_c03660 at 354.244 kb on + strand at 354.252 kb on - strand at 354.285 kb on + strand at 354.285 kb on + strand at 354.295 kb on + strand at 354.295 kb on + strand at 354.295 kb on + strand at 354.298 kb on - strand at 354.300 kb on + strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.308 kb on - strand at 354.308 kb on - strand at 354.318 kb on - strand at 354.355 kb on - strand at 354.379 kb on - strand at 354.385 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 351,635 - -0.1 351,635 - +2.2 351,638 + +1.8 351,638 + -0.3 351,638 + +1.7 351,638 + -0.5 351,638 + +0.7 351,638 + -0.3 351,638 + +0.1 351,646 - +0.9 351,646 - -0.2 351,646 - -0.8 351,646 - -1.3 351,646 - -1.8 351,646 - -1.3 351,646 - +2.0 351,648 + -0.4 351,672 - -1.1 351,697 - +0.8 351,704 + -1.5 351,746 + -0.9 351,754 - +0.3 351,756 + +0.4 351,764 - +0.1 351,783 + -0.2 351,791 - +1.7 351,791 - +0.5 351,860 - PGA1_c03640 0.16 +0.2 351,882 - PGA1_c03640 0.20 -0.1 351,936 - PGA1_c03640 0.30 +3.3 351,973 + PGA1_c03640 0.37 -3.1 351,988 + PGA1_c03640 0.39 +0.8 351,996 - PGA1_c03640 0.41 +0.4 351,999 + PGA1_c03640 0.41 -2.5 352,006 + PGA1_c03640 0.43 -1.9 352,094 + PGA1_c03640 0.59 +1.1 352,094 + PGA1_c03640 0.59 -2.0 352,094 + PGA1_c03640 0.59 -0.9 352,094 + PGA1_c03640 0.59 -1.5 352,094 + PGA1_c03640 0.59 +1.1 352,094 + PGA1_c03640 0.59 +0.0 352,102 - PGA1_c03640 0.60 +0.7 352,115 + PGA1_c03640 0.62 +0.4 352,171 - PGA1_c03640 0.73 +1.2 352,184 + PGA1_c03640 0.75 +0.6 352,184 + PGA1_c03640 0.75 -0.8 352,192 - PGA1_c03640 0.77 +1.1 352,203 + PGA1_c03640 0.79 +1.8 352,204 + PGA1_c03640 0.79 +0.6 352,208 + PGA1_c03640 0.79 +1.0 352,266 + +1.1 352,313 - +0.9 352,327 + -2.4 352,375 - +0.8 352,385 + +1.1 352,419 - -0.2 352,419 - +0.4 352,419 - +1.3 352,419 - -1.9 352,424 - -0.8 352,440 + +0.7 353,354 - -1.5 353,433 - +0.5 353,465 + -1.1 353,470 + -0.3 353,477 + -0.3 353,479 + +1.1 353,487 - -0.1 353,487 - -2.6 353,489 + -0.9 353,489 + +0.8 353,489 + +1.2 353,495 - -2.0 353,497 - +1.7 353,497 - -2.0 353,497 - +2.4 353,497 - -1.6 353,498 + +0.7 353,498 + +1.9 353,498 + +1.5 353,506 - +2.1 353,506 - +0.8 353,566 - -0.1 353,600 + +1.3 353,632 - PGA1_c03660 0.11 -0.6 353,635 + PGA1_c03660 0.11 -0.9 353,635 + PGA1_c03660 0.11 -0.1 353,686 - PGA1_c03660 0.18 +2.0 353,695 + PGA1_c03660 0.19 +0.5 353,695 + PGA1_c03660 0.19 +1.1 353,701 + PGA1_c03660 0.20 +1.0 353,718 - PGA1_c03660 0.22 +1.4 353,745 + PGA1_c03660 0.26 +1.3 353,750 - PGA1_c03660 0.26 +1.4 353,750 - PGA1_c03660 0.26 +1.7 353,788 - PGA1_c03660 0.31 +1.9 353,810 + PGA1_c03660 0.34 +1.1 353,829 - PGA1_c03660 0.37 +2.1 353,844 - PGA1_c03660 0.39 -0.9 353,848 + PGA1_c03660 0.39 -0.3 353,901 + PGA1_c03660 0.46 +0.9 353,901 + PGA1_c03660 0.46 +0.5 353,918 - PGA1_c03660 0.49 +1.2 353,928 - PGA1_c03660 0.50 +1.0 354,023 + PGA1_c03660 0.62 +1.5 354,067 + PGA1_c03660 0.68 +0.5 354,067 + PGA1_c03660 0.68 +0.5 354,075 - PGA1_c03660 0.69 -2.2 354,076 + PGA1_c03660 0.69 +0.7 354,093 + PGA1_c03660 0.72 -2.0 354,131 + PGA1_c03660 0.77 +1.3 354,168 - PGA1_c03660 0.82 +1.2 354,175 + PGA1_c03660 0.83 +1.3 354,176 + PGA1_c03660 0.83 -0.1 354,176 + PGA1_c03660 0.83 -1.1 354,184 - PGA1_c03660 0.84 +1.3 354,186 + PGA1_c03660 0.84 +1.0 354,186 + PGA1_c03660 0.84 -0.3 354,194 - PGA1_c03660 0.85 +0.2 354,194 - PGA1_c03660 0.85 -2.0 354,221 + PGA1_c03660 0.89 -1.1 354,222 - PGA1_c03660 0.89 +1.8 354,222 - PGA1_c03660 0.89 -1.1 354,229 - PGA1_c03660 0.90 -0.3 354,244 + +3.6 354,252 - -1.6 354,285 + +0.2 354,285 + +1.2 354,295 + +0.5 354,295 + -0.5 354,295 + +0.4 354,298 - -1.5 354,300 + +0.1 354,303 - -0.9 354,303 - +0.3 354,303 - +1.6 354,303 - +1.2 354,303 - +0.3 354,303 - +1.4 354,308 - +0.3 354,308 - +0.8 354,318 - +0.9 354,355 - +2.3 354,379 - -1.6 354,385 + +0.1
Or see this region's nucleotide sequence