Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_342 and HP15_343 are separated by 10 nucleotides HP15_343 and HP15_344 are separated by 17 nucleotides HP15_344 and HP15_345 are separated by 53 nucleotides
HP15_342: HP15_342 - RNA polymerase sigma factor SigE, at 337,773 to 338,309
_342
HP15_343: HP15_343 - transmembrane anti-sigma factor, at 338,320 to 339,021
_343
HP15_344: HP15_344 - conserved hypothetical protein, secreted, at 339,039 to 339,392
_344
HP15_345: HP15_345 - tetratricopeptide TPR_4-containing protein, at 339,446 to 340,768
_345
Position (kb) 339
340 Strain fitness (log2 ratio) -1
0
1 at 338.050 kb on + strand, within HP15_342 at 338.190 kb on + strand, within HP15_342 at 338.228 kb on + strand, within HP15_342 at 338.303 kb on + strand at 338.363 kb on + strand at 338.435 kb on + strand, within HP15_343 at 338.487 kb on + strand, within HP15_343 at 338.513 kb on + strand, within HP15_343 at 338.518 kb on + strand, within HP15_343 at 338.572 kb on + strand, within HP15_343 at 338.597 kb on + strand, within HP15_343 at 338.636 kb on - strand, within HP15_343 at 338.800 kb on - strand, within HP15_343 at 338.828 kb on + strand, within HP15_343 at 339.098 kb on + strand, within HP15_344 at 339.098 kb on + strand, within HP15_344 at 339.121 kb on - strand, within HP15_344 at 339.142 kb on + strand, within HP15_344 at 339.289 kb on - strand, within HP15_344 at 339.307 kb on + strand, within HP15_344 at 339.317 kb on + strand, within HP15_344 at 339.329 kb on + strand, within HP15_344 at 339.363 kb on - strand at 339.418 kb on - strand at 339.418 kb on - strand at 339.465 kb on + strand at 339.572 kb on + strand at 339.572 kb on + strand at 339.627 kb on - strand, within HP15_345 at 339.627 kb on - strand, within HP15_345 at 339.745 kb on + strand, within HP15_345 at 339.779 kb on + strand, within HP15_345 at 339.805 kb on + strand, within HP15_345 at 339.813 kb on - strand, within HP15_345 at 339.966 kb on - strand, within HP15_345 at 340.114 kb on - strand, within HP15_345 at 340.124 kb on + strand, within HP15_345 at 340.134 kb on + strand, within HP15_345 at 340.137 kb on - strand, within HP15_345 at 340.142 kb on - strand at 340.142 kb on - strand, within HP15_345 at 340.208 kb on + strand, within HP15_345 at 340.234 kb on + strand, within HP15_345 at 340.234 kb on + strand, within HP15_345 at 340.269 kb on + strand, within HP15_345 at 340.287 kb on - strand, within HP15_345
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 5 mM remove 338,050 + HP15_342 0.52 -0.5 338,190 + HP15_342 0.78 -1.7 338,228 + HP15_342 0.85 -0.1 338,303 + -1.0 338,363 + +0.2 338,435 + HP15_343 0.16 +0.8 338,487 + HP15_343 0.24 +0.2 338,513 + HP15_343 0.27 +0.6 338,518 + HP15_343 0.28 +1.0 338,572 + HP15_343 0.36 -1.3 338,597 + HP15_343 0.39 +0.5 338,636 - HP15_343 0.45 +0.1 338,800 - HP15_343 0.68 +0.2 338,828 + HP15_343 0.72 +0.4 339,098 + HP15_344 0.17 -0.3 339,098 + HP15_344 0.17 +0.3 339,121 - HP15_344 0.23 +0.3 339,142 + HP15_344 0.29 -0.0 339,289 - HP15_344 0.71 -0.2 339,307 + HP15_344 0.76 -0.2 339,317 + HP15_344 0.79 +0.3 339,329 + HP15_344 0.82 -0.6 339,363 - -0.8 339,418 - +1.0 339,418 - -1.0 339,465 + +0.0 339,572 + -1.5 339,572 + -0.2 339,627 - HP15_345 0.14 +0.4 339,627 - HP15_345 0.14 -0.0 339,745 + HP15_345 0.23 +0.5 339,779 + HP15_345 0.25 -0.2 339,805 + HP15_345 0.27 +0.4 339,813 - HP15_345 0.28 -0.0 339,966 - HP15_345 0.39 +0.2 340,114 - HP15_345 0.50 +0.9 340,124 + HP15_345 0.51 +0.3 340,134 + HP15_345 0.52 +0.8 340,137 - HP15_345 0.52 -0.2 340,142 - -0.1 340,142 - HP15_345 0.53 +0.2 340,208 + HP15_345 0.58 +0.4 340,234 + HP15_345 0.60 -0.4 340,234 + HP15_345 0.60 -0.1 340,269 + HP15_345 0.62 -0.3 340,287 - HP15_345 0.64 +0.4
Or see this region's nucleotide sequence