Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33440

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
3,503,076	+				+0.9
3,503,115	+				+0.5
3,503,118	-				-0.9
3,503,129	+				-1.4
3,503,137	-				-0.1
3,503,180	-				-0.1
3,503,208	+				+1.0
3,503,274	-				-0.8
3,503,276	-				-0.7
3,503,329	+		PGA1_c33430	0.16	-0.5
3,503,380	-		PGA1_c33430	0.25	-1.7
3,503,388	-		PGA1_c33430	0.26	-1.9
3,503,470	-		PGA1_c33430	0.40	+1.0
3,503,476	+		PGA1_c33430	0.41	-2.7
3,503,539	-		PGA1_c33430	0.52	+0.7
3,503,539	-		PGA1_c33430	0.52	+0.5
3,503,556	+		PGA1_c33430	0.54	-3.2
3,503,556	+		PGA1_c33430	0.54	+0.3
3,503,556	+		PGA1_c33430	0.54	+0.4
3,503,564	-		PGA1_c33430	0.56	+0.7
3,503,566	+		PGA1_c33430	0.56	-1.9
3,503,572	+		PGA1_c33430	0.57	+0.6
3,503,578	+		PGA1_c33430	0.58	+0.5
3,503,578	+		PGA1_c33430	0.58	+2.7
3,503,580	-		PGA1_c33430	0.59	+0.0
3,503,590	+		PGA1_c33430	0.60	+0.7
3,503,590	+		PGA1_c33430	0.60	+0.1
3,503,635	+		PGA1_c33430	0.68	+0.6
3,503,669	+		PGA1_c33430	0.74	+0.0
3,503,675	+		PGA1_c33430	0.75	-0.1
3,503,711	-		PGA1_c33430	0.81	-0.6
3,503,756	+		PGA1_c33430	0.88	+1.3
3,503,870	+				-0.2
3,503,877	+				-0.9
3,503,892	+				-0.3
3,503,907	+				-2.5
3,503,946	-		PGA1_c33440	0.12	+0.1
3,503,999	-		PGA1_c33440	0.17	-1.1
3,504,059	-		PGA1_c33440	0.21	-1.0
3,504,064	-		PGA1_c33440	0.22	+0.6
3,504,193	+		PGA1_c33440	0.32	-0.2
3,504,201	-		PGA1_c33440	0.33	-1.4
3,504,245	-		PGA1_c33440	0.37	-1.8
3,504,259	+		PGA1_c33440	0.38	-1.1
3,504,297	+		PGA1_c33440	0.41	+1.1
3,504,297	+		PGA1_c33440	0.41	-1.9
3,504,297	+		PGA1_c33440	0.41	+0.3
3,504,298	+		PGA1_c33440	0.41	-1.5
3,504,347	-		PGA1_c33440	0.45	-2.2
3,504,373	-		PGA1_c33440	0.47	+0.1
3,504,407	-		PGA1_c33440	0.50	-2.4
3,504,407	-		PGA1_c33440	0.50	+0.8
3,504,407	-		PGA1_c33440	0.50	-2.3
3,504,415	+		PGA1_c33440	0.50	-0.3
3,504,433	-		PGA1_c33440	0.52	-0.7
3,504,433	-		PGA1_c33440	0.52	-0.5
3,504,443	-		PGA1_c33440	0.53	+0.0
3,504,489	+		PGA1_c33440	0.57	-3.0
3,504,497	-		PGA1_c33440	0.57	-3.0
3,504,534	+		PGA1_c33440	0.60	-1.7
3,504,534	-		PGA1_c33440	0.60	-2.5
3,504,534	-		PGA1_c33440	0.60	+2.1
3,504,563	-		PGA1_c33440	0.63	-0.3
3,504,580	+		PGA1_c33440	0.64	+1.7
3,504,627	+		PGA1_c33440	0.68	+0.0
3,504,635	-		PGA1_c33440	0.68	-0.5
3,504,635	-		PGA1_c33440	0.68	-1.9
3,504,670	-		PGA1_c33440	0.71	+0.3
3,504,728	+		PGA1_c33440	0.76	+2.1
3,504,733	+		PGA1_c33440	0.76	-0.2
3,504,741	-		PGA1_c33440	0.77	-0.5
3,504,741	-		PGA1_c33440	0.77	+0.2
3,504,746	+		PGA1_c33440	0.78	-1.0
3,504,789	+		PGA1_c33440	0.81	-0.1
3,504,789	+		PGA1_c33440	0.81	+0.3
3,504,797	-		PGA1_c33440	0.82	-0.3
3,504,846	-		PGA1_c33440	0.86	+0.8
3,504,958	+				+0.6
3,504,971	+				+0.0
3,504,972	+				+1.8
3,504,979	-				+1.4
3,504,980	+				+1.7
3,504,980	+				-0.8
3,504,992	-				-2.2
3,505,080	-				-2.9
3,505,095	+				-0.0
3,505,095	+				-0.7
3,505,137	+				-0.2
3,505,158	+				+0.3
3,505,166	+				+0.7
3,505,171	-				+0.1
3,505,186	-				-1.0
3,505,206	+				+1.4
3,505,240	-				-1.0
3,505,240	-				+2.5
3,505,240	-				+1.7
3,505,242	-				+0.8
3,505,245	-				-1.3
3,505,252	+				-2.2
3,505,293	+				-1.2
3,505,293	+				-0.6
3,505,293	+				-0.8
3,505,293	+				-0.5
3,505,301	-				+0.8
3,505,301	-				+0.8
3,505,301	-				+0.6
3,505,346	-				-0.3
3,505,399	+				-1.6
3,505,405	+				+0.2
3,505,461	+				+1.2
3,505,497	-				-0.3
3,505,497	-				+0.6
3,505,499	-				+0.6
3,505,524	+		PGA1_c33450	0.12	-0.2
3,505,524	+		PGA1_c33450	0.12	-2.7
3,505,531	-		PGA1_c33450	0.13	-1.3
3,505,542	-		PGA1_c33450	0.15	-0.7
3,505,542	-		PGA1_c33450	0.15	+2.0
3,505,600	-		PGA1_c33450	0.24	+0.9
3,505,642	+		PGA1_c33450	0.31	+0.6
3,505,680	-		PGA1_c33450	0.37	+1.4
3,505,704	-		PGA1_c33450	0.41	-1.0
3,505,708	+		PGA1_c33450	0.41	-2.2
3,505,716	-		PGA1_c33450	0.43	-0.0
3,505,757	+		PGA1_c33450	0.49	-0.1
3,505,823	-		PGA1_c33450	0.60	-0.6
3,505,842	-		PGA1_c33450	0.63	-2.9
3,505,908	-		PGA1_c33450	0.74	+0.2
3,505,932	-		PGA1_c33450	0.78	-0.4
3,505,941	+		PGA1_c33450	0.79	+0.2
3,505,995	+		PGA1_c33450	0.88	-1.2
3,506,018	+				+0.9