Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30710

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
3,206,935	-		PGA1_c30700	0.22	-1.6
3,206,942	+		PGA1_c30700	0.22	+2.2
3,206,961	-		PGA1_c30700	0.24	-0.4
3,206,962	+		PGA1_c30700	0.24	+0.8
3,206,970	-		PGA1_c30700	0.25	+0.6
3,207,000	-		PGA1_c30700	0.27	+1.2
3,207,010	-		PGA1_c30700	0.28	+0.1
3,207,027	-		PGA1_c30700	0.29	+0.3
3,207,043	-		PGA1_c30700	0.30	-0.2
3,207,043	-		PGA1_c30700	0.30	+0.1
3,207,050	+		PGA1_c30700	0.31	+0.8
3,207,057	-		PGA1_c30700	0.31	+0.5
3,207,058	+		PGA1_c30700	0.32	-0.1
3,207,058	-		PGA1_c30700	0.32	-1.0
3,207,058	-		PGA1_c30700	0.32	-0.9
3,207,058	-		PGA1_c30700	0.32	+0.5
3,207,066	-		PGA1_c30700	0.32	-1.7
3,207,066	-		PGA1_c30700	0.32	-0.3
3,207,095	+		PGA1_c30700	0.34	+1.8
3,207,095	+		PGA1_c30700	0.34	-0.7
3,207,095	+		PGA1_c30700	0.34	-2.0
3,207,095	-		PGA1_c30700	0.34	-1.9
3,207,100	-		PGA1_c30700	0.35	-0.2
3,207,105	-		PGA1_c30700	0.35	+0.3
3,207,105	-		PGA1_c30700	0.35	-2.1
3,207,204	-		PGA1_c30700	0.43	+1.9
3,207,273	-		PGA1_c30700	0.48	+0.5
3,207,304	-		PGA1_c30700	0.51	-2.1
3,207,304	-		PGA1_c30700	0.51	+0.4
3,207,313	+		PGA1_c30700	0.51	+0.1
3,207,349	+		PGA1_c30700	0.54	-1.3
3,207,349	+		PGA1_c30700	0.54	-1.1
3,207,352	-		PGA1_c30700	0.55	-0.9
3,207,357	-		PGA1_c30700	0.55	+0.5
3,207,357	-		PGA1_c30700	0.55	+2.0
3,207,357	-		PGA1_c30700	0.55	-0.2
3,207,357	-		PGA1_c30700	0.55	+1.4
3,207,430	+		PGA1_c30700	0.61	-0.9
3,207,473	+		PGA1_c30700	0.64	-2.7
3,207,473	+		PGA1_c30700	0.64	+0.3
3,207,483	+		PGA1_c30700	0.65	-1.7
3,207,491	-		PGA1_c30700	0.65	+0.4
3,207,539	-		PGA1_c30700	0.69	+0.3
3,207,541	+		PGA1_c30700	0.69	-2.4
3,207,541	+		PGA1_c30700	0.69	+0.6
3,207,541	+		PGA1_c30700	0.69	-2.5
3,207,544	-		PGA1_c30700	0.70	-2.7
3,207,556	-		PGA1_c30700	0.71	-1.5
3,207,569	+		PGA1_c30700	0.72	+0.5
3,207,576	+		PGA1_c30700	0.72	+0.1
3,207,596	-		PGA1_c30700	0.74	+1.6
3,207,625	-		PGA1_c30700	0.76	-2.0
3,207,647	+		PGA1_c30700	0.78	+0.8
3,207,669	-		PGA1_c30700	0.79	+1.0
3,207,700	+		PGA1_c30700	0.82	-2.5
3,207,700	+		PGA1_c30700	0.82	+1.5
3,207,700	+		PGA1_c30700	0.82	-0.2
3,207,700	+		PGA1_c30700	0.82	-0.7
3,207,700	+		PGA1_c30700	0.82	-1.7
3,207,708	-		PGA1_c30700	0.82	+0.7
3,207,708	-		PGA1_c30700	0.82	-1.7
3,207,708	-		PGA1_c30700	0.82	-0.2
3,207,718	-		PGA1_c30700	0.83	+0.1
3,207,746	+		PGA1_c30700	0.85	+2.6
3,207,817	-				-0.4
3,207,851	+				-1.3
3,207,851	+				-0.9
3,207,866	-				-1.3
3,207,873	+				+1.3
3,207,888	-				-2.7
3,207,904	-				+0.1
3,207,934	+				-0.9
3,207,942	-				-0.6
3,207,942	-				-0.3
3,207,942	-				-0.7
3,207,942	-				-0.3
3,207,942	-				-1.9
3,207,942	-				+2.7
3,207,986	+				+1.4
3,207,986	+				+1.5
3,207,988	+				+2.5
3,207,994	-				+0.0
3,208,083	-				-0.8
3,208,136	+				+2.5
3,208,157	+				+0.7
3,208,170	-				-1.0
3,208,201	+		PGA1_c30710	0.11	-1.1
3,208,257	+		PGA1_c30710	0.13	+0.0
3,208,267	+		PGA1_c30710	0.14	+0.4
3,208,287	+		PGA1_c30710	0.15	-2.2
3,208,295	-		PGA1_c30710	0.15	+0.8
3,208,307	+		PGA1_c30710	0.15	-3.7
3,208,307	+		PGA1_c30710	0.15	-0.2
3,208,307	+		PGA1_c30710	0.15	-0.0
3,208,307	+		PGA1_c30710	0.15	-2.2
3,208,307	+		PGA1_c30710	0.15	-1.1
3,208,307	+		PGA1_c30710	0.15	-0.4
3,208,307	+		PGA1_c30710	0.15	+0.1
3,208,307	+		PGA1_c30710	0.15	-0.7
3,208,315	-		PGA1_c30710	0.16	+1.3
3,208,315	-		PGA1_c30710	0.16	-0.1
3,208,315	-		PGA1_c30710	0.16	-2.5
3,208,315	-		PGA1_c30710	0.16	+0.9
3,208,315	-		PGA1_c30710	0.16	-3.0
3,208,438	+		PGA1_c30710	0.21	+3.1
3,208,443	+		PGA1_c30710	0.21	+1.0
3,208,451	-		PGA1_c30710	0.21	-2.0
3,208,451	-		PGA1_c30710	0.21	+1.5
3,208,451	-		PGA1_c30710	0.21	-3.0
3,208,468	-		PGA1_c30710	0.22	+1.2
3,208,472	+		PGA1_c30710	0.22	+2.5
3,208,472	+		PGA1_c30710	0.22	-0.2
3,208,480	-		PGA1_c30710	0.23	-2.2
3,208,550	+		PGA1_c30710	0.25	-2.7
3,208,556	-		PGA1_c30710	0.26	-2.9
3,208,565	-		PGA1_c30710	0.26	-1.0
3,208,581	-		PGA1_c30710	0.27	-0.3
3,208,636	+		PGA1_c30710	0.29	-0.9
3,208,666	+		PGA1_c30710	0.30	-2.3
3,208,666	+		PGA1_c30710	0.30	-3.5
3,208,666	+		PGA1_c30710	0.30	-2.1
3,208,666	+		PGA1_c30710	0.30	+2.0
3,208,674	-		PGA1_c30710	0.30	+0.5
3,208,674	-		PGA1_c30710	0.30	+0.9
3,208,674	-		PGA1_c30710	0.30	+1.4
3,208,674	-		PGA1_c30710	0.30	+1.3
3,208,674	-		PGA1_c30710	0.30	-0.1
3,208,674	-		PGA1_c30710	0.30	-2.1
3,208,674	-		PGA1_c30710	0.30	-0.1
3,208,689	+		PGA1_c30710	0.31	-0.6
3,208,761	-		PGA1_c30710	0.34	-2.6
3,208,766	-		PGA1_c30710	0.34	+2.3
3,208,776	+		PGA1_c30710	0.35	-0.5
3,208,776	+		PGA1_c30710	0.35	+0.9
3,208,821	+		PGA1_c30710	0.36	-1.3
3,208,838	-		PGA1_c30710	0.37	-0.3
3,208,849	+		PGA1_c30710	0.37	-2.8
3,208,854	+		PGA1_c30710	0.38	-0.9
3,208,854	+		PGA1_c30710	0.38	-2.4
3,208,854	+		PGA1_c30710	0.38	+1.0
3,208,857	-		PGA1_c30710	0.38	-1.9
3,208,862	-		PGA1_c30710	0.38	-1.5
3,208,862	-		PGA1_c30710	0.38	-0.8
3,208,864	+		PGA1_c30710	0.38	-1.5
3,208,864	+		PGA1_c30710	0.38	-0.9
3,208,865	+		PGA1_c30710	0.38	-1.2
3,208,867	-		PGA1_c30710	0.38	-1.1
3,208,871	+		PGA1_c30710	0.38	-3.2
3,208,871	+		PGA1_c30710	0.38	+0.1
3,208,872	-		PGA1_c30710	0.38	+0.3
3,208,873	-		PGA1_c30710	0.38	-0.3
3,208,884	+		PGA1_c30710	0.39	-1.3
3,209,011	+		PGA1_c30710	0.44	+0.2
3,209,011	+		PGA1_c30710	0.44	+0.7
3,209,011	+		PGA1_c30710	0.44	-1.2
3,209,019	-		PGA1_c30710	0.44	-1.5
3,209,021	+		PGA1_c30710	0.44	-0.9
3,209,031	+		PGA1_c30710	0.45	+1.2
3,209,031	+		PGA1_c30710	0.45	-2.9
3,209,126	+		PGA1_c30710	0.49	-2.1
3,209,134	-		PGA1_c30710	0.49	-0.0
3,209,238	+		PGA1_c30710	0.53	-0.6
3,209,255	+		PGA1_c30710	0.54	+1.6
3,209,309	+		PGA1_c30710	0.56	-0.0
3,209,309	+		PGA1_c30710	0.56	+0.1
3,209,322	-		PGA1_c30710	0.57	-0.0
3,209,399	+		PGA1_c30710	0.60	-0.8
3,209,407	-		PGA1_c30710	0.60	+1.7
3,209,407	-		PGA1_c30710	0.60	+3.0
3,209,421	+		PGA1_c30710	0.61	+0.5
3,209,441	-		PGA1_c30710	0.61	-0.1
3,209,537	-		PGA1_c30710	0.65	+1.4
3,209,595	+		PGA1_c30710	0.68	-0.1
3,209,603	-		PGA1_c30710	0.68	+1.1
3,209,603	-		PGA1_c30710	0.68	+0.8
3,209,659	-		PGA1_c30710	0.70	+0.5
3,209,757	+		PGA1_c30710	0.74	+0.1
3,209,825	+		PGA1_c30710	0.77	+1.3
3,209,825	+		PGA1_c30710	0.77	-1.5
3,209,825	+		PGA1_c30710	0.77	-3.4
3,209,825	+		PGA1_c30710	0.77	-3.2
3,209,833	-		PGA1_c30710	0.77	-0.8
3,209,833	-		PGA1_c30710	0.77	-1.5
3,209,833	-		PGA1_c30710	0.77	+1.6
3,209,965	-		PGA1_c30710	0.83	-2.1
3,209,991	+		PGA1_c30710	0.84	+0.2
3,209,997	+		PGA1_c30710	0.84	-0.6
3,209,997	+		PGA1_c30710	0.84	+1.0
3,210,018	+		PGA1_c30710	0.85	-0.2
3,210,027	-		PGA1_c30710	0.85	-0.8
3,210,060	-		PGA1_c30710	0.87	-0.7
3,210,061	+		PGA1_c30710	0.87	-0.5
3,210,061	+		PGA1_c30710	0.87	-0.7
3,210,061	+		PGA1_c30710	0.87	+0.4
3,210,061	+		PGA1_c30710	0.87	-2.3
3,210,069	-		PGA1_c30710	0.87	-2.6
3,210,069	-		PGA1_c30710	0.87	-0.4
3,210,069	-		PGA1_c30710	0.87	-0.7
3,210,069	-		PGA1_c30710	0.87	-2.7
3,210,148	-				+0.6
3,210,170	+				-1.0
3,210,204	+				+0.9
3,210,237	+				+0.6
3,210,245	-				-2.5
3,210,252	+				-0.8
3,210,259	-				-2.5
3,210,260	-				+0.5
3,210,260	-				+1.3
3,210,261	+				-1.8
3,210,261	+				-0.5
3,210,261	+				-1.2
3,210,261	+				+0.1
3,210,261	+				-0.2
3,210,261	+				+0.8
3,210,261	+				+1.2
3,210,261	+				-0.1
3,210,269	-				+0.4
3,210,269	-				+0.6
3,210,269	-				+0.9
3,210,269	-				+1.4
3,210,269	-				+1.5
3,210,269	-				-1.5
3,210,269	-				+0.9
3,210,269	-				+0.5
3,210,269	-				-2.7
3,210,317	+				+0.9
3,210,317	+				+1.4
3,210,317	-				-1.5
3,210,337	+				-0.7
3,210,345	-				+2.7
3,210,347	-				-0.4
3,210,372	-				-0.0
3,210,385	-				+0.3
3,210,405	+				-0.9
3,210,416	+				+0.6
3,210,416	+				+0.1
3,210,416	+				-1.6
3,210,416	+				+0.8
3,210,424	-				+0.2
3,210,424	-				+0.0
3,210,425	-				+0.9
3,210,426	+				+0.1
3,210,448	+				+0.9
3,210,448	+				+1.2
3,210,448	+				+1.4
3,210,448	+				+0.6
3,210,456	+				+1.2
3,210,456	-				-1.9
3,210,456	-				-2.5
3,210,464	-				+1.3
3,210,464	-				+0.9
3,210,464	-				+1.1
3,210,476	+				+1.5
3,210,476	+				-1.0
3,210,491	+				-0.7
3,210,492	+				+0.3
3,210,492	+				-3.2
3,210,492	+				-2.9
3,210,492	+				+0.3
3,210,492	+				-0.1
3,210,492	+				-1.1
3,210,492	+				+1.6
3,210,492	+				+1.0
3,210,492	+				+1.3
3,210,492	+				-2.5
3,210,492	+				+0.8
3,210,492	+				+0.4
3,210,500	-				+2.1
3,210,500	-				+0.8
3,210,500	-				-3.2
3,210,500	-				-0.4
3,210,512	-				-1.4
3,210,539	+		PGA1_c30720	0.11	-1.3
3,210,586	+		PGA1_c30720	0.27	-0.4
3,210,657	+		PGA1_c30720	0.51	+0.4
3,210,658	-		PGA1_c30720	0.51	+0.8
3,210,676	+		PGA1_c30720	0.57	-0.8
3,210,705	-		PGA1_c30720	0.67	-1.7
3,210,705	-		PGA1_c30720	0.67	-3.3
3,210,705	-		PGA1_c30720	0.67	+0.6
3,210,707	-		PGA1_c30720	0.67	+0.2
3,210,712	-		PGA1_c30720	0.69	+0.2
3,210,717	-		PGA1_c30720	0.71	-2.7
3,210,717	-		PGA1_c30720	0.71	-0.8
3,210,717	-		PGA1_c30720	0.71	-0.4
3,210,734	-		PGA1_c30720	0.76	+1.0
3,210,744	-		PGA1_c30720	0.80	-1.7
3,210,744	-		PGA1_c30720	0.80	+0.5
3,210,752	+		PGA1_c30720	0.82	-1.5
3,210,753	+		PGA1_c30720	0.83	-1.1
3,210,753	+		PGA1_c30720	0.83	+0.5
3,210,753	+		PGA1_c30720	0.83	-0.1
3,210,753	+		PGA1_c30720	0.83	-1.8
3,210,753	+		PGA1_c30720	0.83	-0.5
3,210,753	+		PGA1_c30720	0.83	+0.1
3,210,753	+		PGA1_c30720	0.83	+0.9
3,210,753	+		PGA1_c30720	0.83	+0.5
3,210,753	+		PGA1_c30720	0.83	-0.7
3,210,753	+		PGA1_c30720	0.83	-2.3
3,210,753	+		PGA1_c30720	0.83	+0.5
3,210,753	+		PGA1_c30720	0.83	-0.4
3,210,753	+		PGA1_c30720	0.83	+2.4
3,210,753	+		PGA1_c30720	0.83	+0.8
3,210,753	+		PGA1_c30720	0.83	-1.5
3,210,753	+		PGA1_c30720	0.83	-1.3
3,210,753	+		PGA1_c30720	0.83	-0.1
3,210,753	+		PGA1_c30720	0.83	-1.0
3,210,753	+		PGA1_c30720	0.83	+0.4
3,210,761	-		PGA1_c30720	0.86	-2.8
3,210,761	-		PGA1_c30720	0.86	-2.1
3,210,761	-		PGA1_c30720	0.86	-0.6
3,210,761	-		PGA1_c30720	0.86	-1.1
3,210,761	-		PGA1_c30720	0.86	-2.5
3,210,761	-		PGA1_c30720	0.86	-0.0
3,210,806	+				-0.3
3,210,806	+				+0.3
3,210,806	+				-1.9
3,210,814	-				+0.7
3,210,814	-				+0.7
3,210,814	-				+2.0
3,210,814	-				+0.1
3,210,820	-				+0.1
3,210,820	-				-0.2
3,210,841	-				-0.2
3,210,899	+		PGA1_c30730	0.22	+1.1
3,210,899	+		PGA1_c30730	0.22	-1.7
3,210,935	+		PGA1_c30730	0.30	+2.5
3,210,956	-		PGA1_c30730	0.35	+1.0
3,210,967	-		PGA1_c30730	0.38	-2.3
3,210,977	-		PGA1_c30730	0.40	+0.3
3,210,995	+		PGA1_c30730	0.44	+1.4
3,211,000	+		PGA1_c30730	0.45	-0.9
3,211,002	-		PGA1_c30730	0.46	+0.8
3,211,010	+		PGA1_c30730	0.48	+0.9
3,211,037	+		PGA1_c30730	0.54	+0.2
3,211,045	-		PGA1_c30730	0.56	-2.6
3,211,045	-		PGA1_c30730	0.56	+1.2
3,211,076	+		PGA1_c30730	0.63	-2.5
3,211,084	+		PGA1_c30730	0.65	-0.9
3,211,093	-		PGA1_c30730	0.67	-2.1
3,211,138	+		PGA1_c30730	0.78	-3.6
3,211,148	-		PGA1_c30730	0.80	-0.9
3,211,236	-				+0.8
3,211,361	+				+2.8