Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29650

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
3,099,254	-				+0.8
3,099,273	+				-0.1
3,099,273	+				+0.3
3,099,336	+		PGA1_c29640	0.13	+0.4
3,099,344	-		PGA1_c29640	0.14	-0.5
3,099,359	+		PGA1_c29640	0.16	+0.0
3,099,385	+		PGA1_c29640	0.19	-3.0
3,099,398	-		PGA1_c29640	0.21	+0.0
3,099,399	-		PGA1_c29640	0.21	-1.6
3,099,425	-		PGA1_c29640	0.24	+1.0
3,099,425	-		PGA1_c29640	0.24	+1.9
3,099,466	+		PGA1_c29640	0.30	+2.6
3,099,504	+		PGA1_c29640	0.34	-0.7
3,099,608	-		PGA1_c29640	0.48	+3.4
3,099,650	-		PGA1_c29640	0.53	-0.7
3,099,707	-		PGA1_c29640	0.60	-2.8
3,099,712	-		PGA1_c29640	0.61	-0.1
3,099,716	+		PGA1_c29640	0.61	+0.2
3,099,724	-		PGA1_c29640	0.62	+0.2
3,099,724	-		PGA1_c29640	0.62	+0.5
3,099,724	-		PGA1_c29640	0.62	+0.3
3,099,737	+		PGA1_c29640	0.64	-3.0
3,099,737	+		PGA1_c29640	0.64	+0.8
3,099,745	-		PGA1_c29640	0.65	-0.1
3,099,747	-		PGA1_c29640	0.65	-0.2
3,099,752	-		PGA1_c29640	0.66	-2.0
3,099,823	-		PGA1_c29640	0.75	+0.9
3,099,844	-		PGA1_c29640	0.78	+1.3
3,099,845	-		PGA1_c29640	0.78	-1.9
3,099,845	-		PGA1_c29640	0.78	-1.4
3,099,899	-		PGA1_c29640	0.85	+1.3
3,099,967	-				+1.6
3,100,006	+				-0.1
3,100,052	+				-0.3
3,100,059	+				+0.7
3,100,092	+				-1.9
3,100,157	+				-0.4
3,100,172	+				-0.9
3,100,175	-				-2.1
3,100,175	-				-1.6
3,100,239	+				+1.5
3,100,240	-				-0.4
3,100,268	-				-0.3
3,100,269	+				+0.7
3,100,284	-				+0.2
3,100,337	+				+0.4
3,100,392	+		PGA1_c29650	0.12	-0.4
3,100,395	-		PGA1_c29650	0.12	+0.3
3,100,410	+		PGA1_c29650	0.13	+0.3
3,100,418	-		PGA1_c29650	0.13	-1.9
3,100,447	+		PGA1_c29650	0.15	-1.3
3,100,478	+		PGA1_c29650	0.18	-1.1
3,100,486	-		PGA1_c29650	0.18	+1.1
3,100,486	-		PGA1_c29650	0.18	+0.1
3,100,803	+		PGA1_c29650	0.40	-0.6
3,100,811	-		PGA1_c29650	0.40	-2.0
3,100,872	-		PGA1_c29650	0.44	-2.0
3,100,911	+		PGA1_c29650	0.47	-0.8
3,100,919	-		PGA1_c29650	0.47	-0.3
3,101,050	+		PGA1_c29650	0.56	-0.2
3,101,050	+		PGA1_c29650	0.56	+0.0
3,101,114	-		PGA1_c29650	0.61	+2.0
3,101,132	+		PGA1_c29650	0.62	-0.6
3,101,198	-		PGA1_c29650	0.66	+1.1
3,101,203	-		PGA1_c29650	0.67	-0.2
3,101,205	-		PGA1_c29650	0.67	-2.7
3,101,215	-		PGA1_c29650	0.67	+0.3
3,101,226	+		PGA1_c29650	0.68	+1.5
3,101,297	+		PGA1_c29650	0.73	-0.0
3,101,297	+		PGA1_c29650	0.73	-2.7
3,101,303	+		PGA1_c29650	0.73	-1.1
3,101,310	-		PGA1_c29650	0.74	+1.1
3,101,342	-		PGA1_c29650	0.76	-3.5
3,101,369	+		PGA1_c29650	0.78	+0.6
3,101,382	-		PGA1_c29650	0.79	-2.8
3,101,387	-		PGA1_c29650	0.79	-1.5
3,101,405	+		PGA1_c29650	0.80	-0.6
3,101,410	+		PGA1_c29650	0.81	+0.1
3,101,413	-		PGA1_c29650	0.81	-0.5
3,101,482	+		PGA1_c29650	0.86	-0.0
3,101,485	-		PGA1_c29650	0.86	-3.8
3,101,485	-		PGA1_c29650	0.86	-2.4
3,101,509	+		PGA1_c29650	0.87	-2.6
3,101,509	+		PGA1_c29650	0.87	+0.5
3,101,517	-		PGA1_c29650	0.88	+1.1
3,101,517	-		PGA1_c29650	0.88	-1.0
3,101,517	-		PGA1_c29650	0.88	-1.5
3,101,517	-		PGA1_c29650	0.88	-1.7
3,101,517	-		PGA1_c29650	0.88	-0.4
3,101,517	-		PGA1_c29650	0.88	-1.4
3,101,539	+		PGA1_c29650	0.89	+1.1
3,101,539	+		PGA1_c29650	0.89	+2.8
3,101,606	+				+0.4
3,101,606	+				+0.2
3,101,614	-				-0.9
3,101,628	-				-2.0
3,101,628	-				-0.6
3,101,687	-				+0.9
3,101,697	-				-2.8
3,101,714	-				+0.7
3,101,783	+				-0.1
3,101,784	-				+1.5
3,101,790	+				-0.1
3,101,822	+				+0.5
3,101,822	-				+0.7
3,101,824	+				+0.4
3,101,846	+				-2.9
3,101,853	+				-1.3
3,101,854	-				+1.2
3,101,861	-				+0.3
3,101,895	-				-0.0
3,101,927	+				+0.1
3,101,927	-				+0.7
3,101,935	-				-2.1
3,101,935	-				-0.3
3,101,935	-				-1.7
3,101,945	+				+1.5
3,101,945	+				-1.5
3,102,008	-				-2.9
3,102,008	-				-0.4
3,102,010	+				-1.4
3,102,010	+				+0.7
3,102,010	+				-0.9
3,102,018	-				+0.1
3,102,018	-				+0.6
3,102,018	-				+0.3
3,102,122	-		PGA1_c29660	0.13	-1.6
3,102,145	-		PGA1_c29660	0.14	+1.6
3,102,163	+		PGA1_c29660	0.15	+0.2
3,102,165	+		PGA1_c29660	0.15	+0.9
3,102,195	+		PGA1_c29660	0.17	+0.8
3,102,228	+		PGA1_c29660	0.18	-2.1
3,102,236	-		PGA1_c29660	0.19	+1.2
3,102,236	-		PGA1_c29660	0.19	-0.9
3,102,265	+		PGA1_c29660	0.20	-0.0
3,102,265	+		PGA1_c29660	0.20	+0.6
3,102,273	-		PGA1_c29660	0.20	+0.7
3,102,273	-		PGA1_c29660	0.20	+0.1
3,102,279	-		PGA1_c29660	0.21	-0.9
3,102,317	+		PGA1_c29660	0.22	-1.5
3,102,320	-		PGA1_c29660	0.22	-1.4
3,102,325	-		PGA1_c29660	0.23	+0.6
3,102,325	-		PGA1_c29660	0.23	-0.1
3,102,337	-		PGA1_c29660	0.23	-0.8
3,102,467	+		PGA1_c29660	0.29	-3.0
3,102,467	+		PGA1_c29660	0.29	-0.6
3,102,469	-		PGA1_c29660	0.29	-0.9
3,102,480	+		PGA1_c29660	0.30	+1.3
3,102,480	+		PGA1_c29660	0.30	+2.9
3,102,488	-		PGA1_c29660	0.30	-0.4
3,102,532	+		PGA1_c29660	0.32	+0.4
3,102,540	-		PGA1_c29660	0.33	+0.6
3,102,548	+		PGA1_c29660	0.33	-1.6
3,102,595	-		PGA1_c29660	0.35	-2.9
3,102,610	-		PGA1_c29660	0.36	-1.9
3,102,641	-		PGA1_c29660	0.37	+1.2
3,102,685	+		PGA1_c29660	0.39	+2.2