Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27350

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
2,849,253	-				-2.3
2,849,254	-				+1.3
2,849,271	+				+1.3
2,849,289	-				-0.8
2,849,300	+		PGA1_c27340	0.10	-0.2
2,849,302	+		PGA1_c27340	0.10	+0.3
2,849,310	-		PGA1_c27340	0.11	+0.2
2,849,312	+		PGA1_c27340	0.11	-0.3
2,849,324	+		PGA1_c27340	0.13	-1.9
2,849,382	+		PGA1_c27340	0.18	-2.8
2,849,382	+		PGA1_c27340	0.18	+0.1
2,849,382	+		PGA1_c27340	0.18	+0.1
2,849,382	+		PGA1_c27340	0.18	-0.6
2,849,382	+		PGA1_c27340	0.18	-1.9
2,849,382	+		PGA1_c27340	0.18	-0.1
2,849,382	+		PGA1_c27340	0.18	-2.8
2,849,382	+		PGA1_c27340	0.18	-2.5
2,849,382	+		PGA1_c27340	0.18	-3.1
2,849,390	-		PGA1_c27340	0.19	-2.3
2,849,390	-		PGA1_c27340	0.19	-1.9
2,849,390	-		PGA1_c27340	0.19	+0.0
2,849,390	-		PGA1_c27340	0.19	+0.7
2,849,390	-		PGA1_c27340	0.19	-4.4
2,849,390	-		PGA1_c27340	0.19	-0.7
2,849,450	+		PGA1_c27340	0.25	+1.0
2,849,482	+		PGA1_c27340	0.28	-1.5
2,849,485	-		PGA1_c27340	0.28	+0.7
2,849,490	-		PGA1_c27340	0.29	+0.5
2,849,525	+		PGA1_c27340	0.32	-2.3
2,849,550	+		PGA1_c27340	0.35	-3.0
2,849,550	+		PGA1_c27340	0.35	+0.0
2,849,550	+		PGA1_c27340	0.35	+1.0
2,849,550	+		PGA1_c27340	0.35	+1.9
2,849,550	+		PGA1_c27340	0.35	+0.9
2,849,558	-		PGA1_c27340	0.35	+0.4
2,849,558	-		PGA1_c27340	0.35	-1.0
2,849,558	-		PGA1_c27340	0.35	-1.2
2,849,560	+		PGA1_c27340	0.36	-1.4
2,849,560	+		PGA1_c27340	0.36	-0.0
2,849,562	+		PGA1_c27340	0.36	-1.1
2,849,568	+		PGA1_c27340	0.36	-1.4
2,849,569	-		PGA1_c27340	0.36	-1.4
2,849,569	-		PGA1_c27340	0.36	-1.6
2,849,570	-		PGA1_c27340	0.37	+0.9
2,849,582	-		PGA1_c27340	0.38	-2.5
2,849,600	+		PGA1_c27340	0.39	-2.4
2,849,608	-		PGA1_c27340	0.40	+0.3
2,849,608	-		PGA1_c27340	0.40	-1.6
2,849,627	-		PGA1_c27340	0.42	-0.1
2,849,674	+		PGA1_c27340	0.47	+0.4
2,849,688	-		PGA1_c27340	0.48	-2.0
2,849,711	-		PGA1_c27340	0.50	-0.9
2,849,721	-		PGA1_c27340	0.51	+0.6
2,849,730	+		PGA1_c27340	0.52	-0.2
2,849,730	+		PGA1_c27340	0.52	+2.3
2,849,738	-		PGA1_c27340	0.53	+1.6
2,849,748	-		PGA1_c27340	0.54	+0.1
2,849,755	+		PGA1_c27340	0.55	-1.1
2,849,761	-		PGA1_c27340	0.55	-1.1
2,849,785	+		PGA1_c27340	0.58	+0.4
2,849,791	+		PGA1_c27340	0.58	+0.1
2,849,809	-		PGA1_c27340	0.60	+0.3
2,849,811	+		PGA1_c27340	0.60	+0.9
2,849,814	-		PGA1_c27340	0.60	+0.1
2,849,819	-		PGA1_c27340	0.61	+0.2
2,849,819	-		PGA1_c27340	0.61	-0.2
2,849,824	+		PGA1_c27340	0.61	-2.3
2,849,826	+		PGA1_c27340	0.62	+0.6
2,849,826	+		PGA1_c27340	0.62	-2.6
2,849,834	+		PGA1_c27340	0.62	-0.7
2,849,834	+		PGA1_c27340	0.62	+0.3
2,849,842	+		PGA1_c27340	0.63	-3.4
2,849,849	+		PGA1_c27340	0.64	-2.2
2,849,849	+		PGA1_c27340	0.64	-3.7
2,849,857	-		PGA1_c27340	0.65	-3.0
2,849,866	+		PGA1_c27340	0.65	-2.0
2,849,866	+		PGA1_c27340	0.65	+0.4
2,849,874	-		PGA1_c27340	0.66	-0.1
2,849,874	-		PGA1_c27340	0.66	+0.2
2,849,874	-		PGA1_c27340	0.66	+1.1
2,849,879	-		PGA1_c27340	0.67	-1.8
2,849,886	+		PGA1_c27340	0.67	+0.9
2,849,917	+		PGA1_c27340	0.70	+0.4
2,849,985	+		PGA1_c27340	0.77	+1.7
2,849,993	-		PGA1_c27340	0.78	+1.1
2,850,043	+		PGA1_c27340	0.83	+0.5
2,850,058	-		PGA1_c27340	0.84	+0.7
2,850,068	+		PGA1_c27340	0.85	+0.9
2,850,092	+		PGA1_c27340	0.87	-2.9
2,850,113	+		PGA1_c27340	0.89	-3.4
2,850,125	+				-2.0
2,850,135	+				-1.1
2,850,135	+				+2.2
2,850,140	+				+0.8
2,850,140	+				-0.1
2,850,143	-				+2.9
2,850,158	-				+0.0
2,850,182	-				+0.1
2,850,182	-				-2.4
2,850,214	+				+0.2
2,850,250	+				+0.1
2,850,258	-				+0.4
2,850,277	+				+2.8
2,850,277	-				-1.4
2,850,287	+				-0.5
2,850,287	+				-3.6
2,850,306	+				+0.4
2,850,325	+		PGA1_c27350	0.12	-1.7
2,850,376	+		PGA1_c27350	0.17	+0.5
2,850,401	+		PGA1_c27350	0.20	-0.6
2,850,404	-		PGA1_c27350	0.21	-1.2
2,850,418	+		PGA1_c27350	0.22	-1.4
2,850,419	-		PGA1_c27350	0.22	-0.7
2,850,433	-		PGA1_c27350	0.24	-4.4
2,850,452	-		PGA1_c27350	0.26	-0.8
2,850,497	+		PGA1_c27350	0.31	-0.9
2,850,500	-		PGA1_c27350	0.31	+0.6
2,850,505	-		PGA1_c27350	0.32	-0.3
2,850,547	+		PGA1_c27350	0.37	+0.9
2,850,547	+		PGA1_c27350	0.37	-2.4
2,850,547	+		PGA1_c27350	0.37	-1.4
2,850,547	+		PGA1_c27350	0.37	-1.0
2,850,547	+		PGA1_c27350	0.37	-0.6
2,850,547	+		PGA1_c27350	0.37	+0.3
2,850,547	+		PGA1_c27350	0.37	+1.0
2,850,552	+		PGA1_c27350	0.37	-2.9
2,850,552	+		PGA1_c27350	0.37	-0.0
2,850,555	-		PGA1_c27350	0.38	-0.8
2,850,555	-		PGA1_c27350	0.38	-2.8
2,850,555	-		PGA1_c27350	0.38	-1.6
2,850,555	-		PGA1_c27350	0.38	-0.0
2,850,557	+		PGA1_c27350	0.38	-2.5
2,850,557	+		PGA1_c27350	0.38	-0.2
2,850,557	+		PGA1_c27350	0.38	-3.0
2,850,573	-		PGA1_c27350	0.40	-0.1
2,850,580	+		PGA1_c27350	0.40	+3.0
2,850,643	-		PGA1_c27350	0.48	+1.4
2,850,650	-		PGA1_c27350	0.48	+0.2
2,850,680	-		PGA1_c27350	0.52	-1.4
2,850,708	-		PGA1_c27350	0.55	-2.1
2,850,722	+		PGA1_c27350	0.56	+0.6
2,850,722	+		PGA1_c27350	0.56	-0.5
2,850,724	+		PGA1_c27350	0.57	+1.4
2,850,792	+		PGA1_c27350	0.64	-0.0
2,850,809	+		PGA1_c27350	0.66	-1.7
2,850,809	+		PGA1_c27350	0.66	-0.7
2,850,809	+		PGA1_c27350	0.66	-0.7
2,850,817	-		PGA1_c27350	0.67	-0.1
2,850,862	+		PGA1_c27350	0.72	-0.1
2,851,019	+				-1.7
2,851,084	+				+0.9
2,851,190	-				-3.2
2,851,226	+				-0.3
2,851,226	+				-0.9
2,851,255	+				-0.1
2,851,255	+				-0.0
2,851,255	+				+1.7
2,851,258	-				-0.9
2,851,263	-				-0.6
2,851,263	-				-0.9
2,851,263	-				-0.6
2,851,269	+				-0.8
2,851,418	+		PGA1_c27360	0.34	-3.1
2,851,482	+		PGA1_c27360	0.46	-0.4
2,851,482	+		PGA1_c27360	0.46	+0.9
2,851,482	+		PGA1_c27360	0.46	+2.0
2,851,495	-		PGA1_c27360	0.48	+0.2
2,851,495	-		PGA1_c27360	0.48	-1.7
2,851,502	+		PGA1_c27360	0.49	-1.0
2,851,571	+		PGA1_c27360	0.62	+0.0
2,851,691	+		PGA1_c27360	0.85	+2.4
2,851,699	-		PGA1_c27360	0.86	-0.7
2,851,701	+		PGA1_c27360	0.86	-0.4
2,851,701	+		PGA1_c27360	0.86	-0.8
2,851,701	+		PGA1_c27360	0.86	-0.0
2,851,709	-		PGA1_c27360	0.88	-3.1
2,851,709	-		PGA1_c27360	0.88	+1.1
2,851,723	+				-1.1
2,851,723	-				+2.0
2,851,846	+				+0.8
2,851,854	-				-1.4
2,851,854	-				-0.1
2,851,858	+				+0.1
2,851,899	+				+0.7
2,851,899	+				-2.5
2,851,950	-		PGA1_c27370	0.13	+0.5
2,852,024	+		PGA1_c27370	0.18	-0.7
2,852,032	-		PGA1_c27370	0.19	+1.4
2,852,032	-		PGA1_c27370	0.19	-1.7