Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2602 and HP15_2603 are separated by 4 nucleotides HP15_2603 and HP15_2604 are separated by 157 nucleotides
HP15_2602: HP15_2602 - hydantoin utilization protein B, at 2,749,989 to 2,751,860
_2602
HP15_2603: HP15_2603 - hydantoin utilization protein A, at 2,751,865 to 2,753,820
_2603
HP15_2604: HP15_2604 - protein containing DUF1329, at 2,753,978 to 2,755,195
_2604
Position (kb)
2751
2752
2753
2754 Strain fitness (log2 ratio)
-2
-1
0
1 at 2750.868 kb on + strand, within HP15_2602 at 2750.868 kb on + strand, within HP15_2602 at 2750.868 kb on + strand, within HP15_2602 at 2750.871 kb on - strand, within HP15_2602 at 2750.918 kb on + strand, within HP15_2602 at 2751.008 kb on - strand, within HP15_2602 at 2751.022 kb on - strand, within HP15_2602 at 2751.076 kb on + strand, within HP15_2602 at 2751.183 kb on + strand, within HP15_2602 at 2751.183 kb on + strand, within HP15_2602 at 2751.207 kb on + strand, within HP15_2602 at 2751.207 kb on + strand, within HP15_2602 at 2751.244 kb on + strand, within HP15_2602 at 2751.262 kb on - strand, within HP15_2602 at 2751.435 kb on + strand, within HP15_2602 at 2751.443 kb on - strand, within HP15_2602 at 2751.484 kb on + strand, within HP15_2602 at 2751.510 kb on - strand, within HP15_2602 at 2751.521 kb on + strand, within HP15_2602 at 2751.529 kb on - strand, within HP15_2602 at 2751.529 kb on - strand, within HP15_2602 at 2751.569 kb on - strand, within HP15_2602 at 2751.712 kb on - strand at 2751.712 kb on - strand at 2751.794 kb on - strand at 2751.876 kb on - strand at 2751.986 kb on + strand at 2752.009 kb on - strand at 2752.009 kb on - strand at 2752.038 kb on + strand at 2752.038 kb on + strand at 2752.233 kb on + strand, within HP15_2603 at 2752.425 kb on + strand, within HP15_2603 at 2752.446 kb on + strand, within HP15_2603 at 2752.567 kb on + strand, within HP15_2603 at 2752.575 kb on - strand, within HP15_2603 at 2752.613 kb on + strand, within HP15_2603 at 2752.631 kb on - strand, within HP15_2603 at 2752.654 kb on - strand, within HP15_2603 at 2752.709 kb on + strand, within HP15_2603 at 2752.711 kb on - strand, within HP15_2603 at 2752.717 kb on - strand, within HP15_2603 at 2752.744 kb on + strand, within HP15_2603 at 2752.809 kb on - strand, within HP15_2603 at 2752.826 kb on + strand, within HP15_2603 at 2752.864 kb on + strand, within HP15_2603 at 2752.869 kb on + strand, within HP15_2603 at 2752.890 kb on + strand, within HP15_2603 at 2752.890 kb on + strand, within HP15_2603 at 2752.893 kb on - strand, within HP15_2603 at 2752.998 kb on + strand, within HP15_2603 at 2753.001 kb on - strand, within HP15_2603 at 2753.024 kb on - strand, within HP15_2603 at 2753.074 kb on + strand, within HP15_2603 at 2753.074 kb on + strand, within HP15_2603 at 2753.082 kb on - strand, within HP15_2603 at 2753.082 kb on - strand, within HP15_2603 at 2753.086 kb on + strand, within HP15_2603 at 2753.171 kb on - strand, within HP15_2603 at 2753.411 kb on - strand, within HP15_2603 at 2753.470 kb on - strand, within HP15_2603 at 2753.579 kb on + strand, within HP15_2603 at 2753.671 kb on + strand at 2753.672 kb on - strand at 2753.848 kb on - strand at 2753.886 kb on + strand at 2753.887 kb on + strand at 2753.913 kb on + strand at 2753.921 kb on - strand at 2753.921 kb on - strand at 2753.932 kb on + strand at 2753.940 kb on - strand at 2753.961 kb on - strand at 2754.003 kb on - strand at 2754.101 kb on + strand, within HP15_2604 at 2754.160 kb on + strand, within HP15_2604 at 2754.160 kb on + strand, within HP15_2604 at 2754.168 kb on - strand, within HP15_2604 at 2754.213 kb on + strand, within HP15_2604 at 2754.260 kb on + strand, within HP15_2604 at 2754.429 kb on + strand, within HP15_2604 at 2754.437 kb on - strand, within HP15_2604 at 2754.486 kb on + strand, within HP15_2604
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 5 mM remove 2,750,868 + HP15_2602 0.47 -0.6 2,750,868 + HP15_2602 0.47 -0.9 2,750,868 + HP15_2602 0.47 +0.3 2,750,871 - HP15_2602 0.47 +0.0 2,750,918 + HP15_2602 0.50 +0.3 2,751,008 - HP15_2602 0.54 +0.1 2,751,022 - HP15_2602 0.55 +0.0 2,751,076 + HP15_2602 0.58 -0.1 2,751,183 + HP15_2602 0.64 +0.1 2,751,183 + HP15_2602 0.64 +0.1 2,751,207 + HP15_2602 0.65 +0.2 2,751,207 + HP15_2602 0.65 -0.4 2,751,244 + HP15_2602 0.67 +0.3 2,751,262 - HP15_2602 0.68 +0.2 2,751,435 + HP15_2602 0.77 -0.2 2,751,443 - HP15_2602 0.78 +0.9 2,751,484 + HP15_2602 0.80 -0.2 2,751,510 - HP15_2602 0.81 -0.1 2,751,521 + HP15_2602 0.82 +0.2 2,751,529 - HP15_2602 0.82 -0.2 2,751,529 - HP15_2602 0.82 +0.8 2,751,569 - HP15_2602 0.84 -1.2 2,751,712 - +0.9 2,751,712 - +0.1 2,751,794 - -0.2 2,751,876 - +1.4 2,751,986 + -0.4 2,752,009 - +0.1 2,752,009 - +0.6 2,752,038 + -0.5 2,752,038 + +0.1 2,752,233 + HP15_2603 0.19 -0.5 2,752,425 + HP15_2603 0.29 -0.0 2,752,446 + HP15_2603 0.30 +0.6 2,752,567 + HP15_2603 0.36 -0.3 2,752,575 - HP15_2603 0.36 +0.1 2,752,613 + HP15_2603 0.38 -0.2 2,752,631 - HP15_2603 0.39 -0.3 2,752,654 - HP15_2603 0.40 +0.4 2,752,709 + HP15_2603 0.43 -0.4 2,752,711 - HP15_2603 0.43 -0.0 2,752,717 - HP15_2603 0.44 +0.3 2,752,744 + HP15_2603 0.45 -1.6 2,752,809 - HP15_2603 0.48 -0.0 2,752,826 + HP15_2603 0.49 +0.9 2,752,864 + HP15_2603 0.51 -0.3 2,752,869 + HP15_2603 0.51 -0.5 2,752,890 + HP15_2603 0.52 +0.1 2,752,890 + HP15_2603 0.52 -0.0 2,752,893 - HP15_2603 0.53 -0.1 2,752,998 + HP15_2603 0.58 -0.3 2,753,001 - HP15_2603 0.58 +1.4 2,753,024 - HP15_2603 0.59 -0.1 2,753,074 + HP15_2603 0.62 +0.2 2,753,074 + HP15_2603 0.62 +0.2 2,753,082 - HP15_2603 0.62 +0.8 2,753,082 - HP15_2603 0.62 +0.7 2,753,086 + HP15_2603 0.62 -0.1 2,753,171 - HP15_2603 0.67 -0.8 2,753,411 - HP15_2603 0.79 -1.1 2,753,470 - HP15_2603 0.82 +0.7 2,753,579 + HP15_2603 0.88 +0.8 2,753,671 + -0.1 2,753,672 - +0.1 2,753,848 - +0.3 2,753,886 + +0.2 2,753,887 + +0.8 2,753,913 + +0.2 2,753,921 - -0.1 2,753,921 - +0.7 2,753,932 + +1.1 2,753,940 - +0.1 2,753,961 - -0.4 2,754,003 - +0.4 2,754,101 + HP15_2604 0.10 -1.9 2,754,160 + HP15_2604 0.15 +0.1 2,754,160 + HP15_2604 0.15 +0.1 2,754,168 - HP15_2604 0.16 -0.1 2,754,213 + HP15_2604 0.19 +0.3 2,754,260 + HP15_2604 0.23 -0.4 2,754,429 + HP15_2604 0.37 +0.1 2,754,437 - HP15_2604 0.38 -0.3 2,754,486 + HP15_2604 0.42 +0.5
Or see this region's nucleotide sequence