Strain Fitness in Marinobacter adhaerens HP15 around HP15_2581

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2580 and HP15_2581 are separated by 353 nucleotidesHP15_2581 and HP15_2582 overlap by 1 nucleotidesHP15_2582 and HP15_2583 overlap by 4 nucleotides HP15_2580: HP15_2580 - 2,4-dienoyl-CoA reductase, at 2,728,291 to 2,730,345 _2580 HP15_2581: HP15_2581 - monovalent cation/H+ antiporter subunit A, at 2,730,699 to 2,733,500 _2581 HP15_2582: HP15_2582 - NADH-ubiquinone oxidoreductase, chain 4L, at 2,733,500 to 2,733,868 _2582 HP15_2583: HP15_2583 - monovalent cation/H+ antiporter subunit D, at 2,733,865 to 2,735,382 _2583 Position (kb) 2730 2731 2732 2733 2734Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2730.069 kb on - strand, within HP15_2580at 2730.191 kb on + strandat 2730.204 kb on + strandat 2730.206 kb on + strandat 2730.206 kb on + strandat 2730.212 kb on - strandat 2730.212 kb on - strandat 2730.223 kb on + strandat 2730.342 kb on - strandat 2730.400 kb on + strandat 2730.439 kb on - strandat 2730.465 kb on + strandat 2730.491 kb on - strandat 2730.544 kb on + strandat 2730.549 kb on + strandat 2730.616 kb on + strandat 2730.636 kb on + strandat 2730.844 kb on + strandat 2730.852 kb on - strandat 2731.071 kb on - strand, within HP15_2581at 2731.107 kb on + strand, within HP15_2581at 2731.210 kb on + strand, within HP15_2581at 2731.210 kb on + strand, within HP15_2581at 2731.223 kb on - strand, within HP15_2581at 2731.324 kb on + strand, within HP15_2581at 2731.388 kb on + strand, within HP15_2581at 2731.495 kb on + strand, within HP15_2581at 2731.503 kb on - strand, within HP15_2581at 2731.558 kb on + strand, within HP15_2581at 2731.708 kb on - strand, within HP15_2581at 2731.839 kb on + strand, within HP15_2581at 2731.891 kb on + strand, within HP15_2581at 2731.995 kb on + strand, within HP15_2581at 2732.054 kb on - strand, within HP15_2581at 2732.211 kb on - strand, within HP15_2581at 2732.339 kb on + strand, within HP15_2581at 2732.420 kb on + strand, within HP15_2581at 2732.433 kb on - strand, within HP15_2581at 2732.489 kb on - strand, within HP15_2581at 2732.609 kb on + strand, within HP15_2581at 2732.664 kb on - strand, within HP15_2581at 2733.259 kb on + strandat 2733.259 kb on + strandat 2733.421 kb on + strandat 2733.448 kb on - strandat 2733.448 kb on - strandat 2733.459 kb on + strandat 2733.520 kb on + strandat 2733.672 kb on + strand, within HP15_2582at 2733.710 kb on + strand, within HP15_2582at 2733.720 kb on - strand, within HP15_2582at 2733.728 kb on - strand, within HP15_2582at 2733.922 kb on - strandat 2733.959 kb on + strandat 2734.328 kb on - strand, within HP15_2583at 2734.422 kb on + strand, within HP15_2583

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 5 mM
remove
2,730,069 - HP15_2580 0.87 +0.2
2,730,191 + +0.6
2,730,204 + -0.3
2,730,206 + -0.6
2,730,206 + +0.1
2,730,212 - -0.0
2,730,212 - +0.1
2,730,223 + +0.6
2,730,342 - -0.4
2,730,400 + -0.9
2,730,439 - -2.6
2,730,465 + -1.4
2,730,491 - -1.6
2,730,544 + -1.1
2,730,549 + -0.3
2,730,616 + +0.1
2,730,636 + -0.4
2,730,844 + -3.3
2,730,852 - -0.3
2,731,071 - HP15_2581 0.13 -5.3
2,731,107 + HP15_2581 0.15 -1.4
2,731,210 + HP15_2581 0.18 -2.7
2,731,210 + HP15_2581 0.18 -2.0
2,731,223 - HP15_2581 0.19 -5.9
2,731,324 + HP15_2581 0.22 -2.6
2,731,388 + HP15_2581 0.25 -2.7
2,731,495 + HP15_2581 0.28 -0.3
2,731,503 - HP15_2581 0.29 -3.6
2,731,558 + HP15_2581 0.31 -4.1
2,731,708 - HP15_2581 0.36 -4.8
2,731,839 + HP15_2581 0.41 -3.4
2,731,891 + HP15_2581 0.43 -1.2
2,731,995 + HP15_2581 0.46 -3.4
2,732,054 - HP15_2581 0.48 -4.3
2,732,211 - HP15_2581 0.54 -3.3
2,732,339 + HP15_2581 0.59 -3.4
2,732,420 + HP15_2581 0.61 -2.9
2,732,433 - HP15_2581 0.62 -1.4
2,732,489 - HP15_2581 0.64 -3.4
2,732,609 + HP15_2581 0.68 +0.1
2,732,664 - HP15_2581 0.70 -3.3
2,733,259 + -1.5
2,733,259 + -5.1
2,733,421 + +0.7
2,733,448 - -1.8
2,733,448 - -3.5
2,733,459 + -0.4
2,733,520 + -2.9
2,733,672 + HP15_2582 0.47 -4.3
2,733,710 + HP15_2582 0.57 -2.2
2,733,720 - HP15_2582 0.60 -1.5
2,733,728 - HP15_2582 0.62 -3.2
2,733,922 - -2.8
2,733,959 + -5.7
2,734,328 - HP15_2583 0.31 -2.1
2,734,422 + HP15_2583 0.37 -3.3

Or see this region's nucleotide sequence