Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2580 and HP15_2581 are separated by 353 nucleotides HP15_2581 and HP15_2582 overlap by 1 nucleotides HP15_2582 and HP15_2583 overlap by 4 nucleotides
HP15_2580: HP15_2580 - 2,4-dienoyl-CoA reductase, at 2,728,291 to 2,730,345
_2580
HP15_2581: HP15_2581 - monovalent cation/H+ antiporter subunit A, at 2,730,699 to 2,733,500
_2581
HP15_2582: HP15_2582 - NADH-ubiquinone oxidoreductase, chain 4L, at 2,733,500 to 2,733,868
_2582
HP15_2583: HP15_2583 - monovalent cation/H+ antiporter subunit D, at 2,733,865 to 2,735,382
_2583
Position (kb)
2730
2731
2732
2733
2734 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2730.069 kb on - strand, within HP15_2580 at 2730.191 kb on + strand at 2730.204 kb on + strand at 2730.206 kb on + strand at 2730.206 kb on + strand at 2730.212 kb on - strand at 2730.212 kb on - strand at 2730.223 kb on + strand at 2730.342 kb on - strand at 2730.400 kb on + strand at 2730.439 kb on - strand at 2730.465 kb on + strand at 2730.491 kb on - strand at 2730.544 kb on + strand at 2730.549 kb on + strand at 2730.616 kb on + strand at 2730.636 kb on + strand at 2730.844 kb on + strand at 2730.852 kb on - strand at 2731.071 kb on - strand, within HP15_2581 at 2731.107 kb on + strand, within HP15_2581 at 2731.210 kb on + strand, within HP15_2581 at 2731.210 kb on + strand, within HP15_2581 at 2731.223 kb on - strand, within HP15_2581 at 2731.324 kb on + strand, within HP15_2581 at 2731.388 kb on + strand, within HP15_2581 at 2731.495 kb on + strand, within HP15_2581 at 2731.503 kb on - strand, within HP15_2581 at 2731.558 kb on + strand, within HP15_2581 at 2731.708 kb on - strand, within HP15_2581 at 2731.839 kb on + strand, within HP15_2581 at 2731.891 kb on + strand, within HP15_2581 at 2731.995 kb on + strand, within HP15_2581 at 2732.054 kb on - strand, within HP15_2581 at 2732.211 kb on - strand, within HP15_2581 at 2732.339 kb on + strand, within HP15_2581 at 2732.420 kb on + strand, within HP15_2581 at 2732.433 kb on - strand, within HP15_2581 at 2732.489 kb on - strand, within HP15_2581 at 2732.609 kb on + strand, within HP15_2581 at 2732.664 kb on - strand, within HP15_2581 at 2733.259 kb on + strand at 2733.259 kb on + strand at 2733.421 kb on + strand at 2733.448 kb on - strand at 2733.448 kb on - strand at 2733.459 kb on + strand at 2733.520 kb on + strand at 2733.672 kb on + strand, within HP15_2582 at 2733.710 kb on + strand, within HP15_2582 at 2733.720 kb on - strand, within HP15_2582 at 2733.728 kb on - strand, within HP15_2582 at 2733.922 kb on - strand at 2733.959 kb on + strand at 2734.328 kb on - strand, within HP15_2583 at 2734.422 kb on + strand, within HP15_2583
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 5 mM remove 2,730,069 - HP15_2580 0.87 +0.2 2,730,191 + +0.6 2,730,204 + -0.3 2,730,206 + -0.6 2,730,206 + +0.1 2,730,212 - -0.0 2,730,212 - +0.1 2,730,223 + +0.6 2,730,342 - -0.4 2,730,400 + -0.9 2,730,439 - -2.6 2,730,465 + -1.4 2,730,491 - -1.6 2,730,544 + -1.1 2,730,549 + -0.3 2,730,616 + +0.1 2,730,636 + -0.4 2,730,844 + -3.3 2,730,852 - -0.3 2,731,071 - HP15_2581 0.13 -5.3 2,731,107 + HP15_2581 0.15 -1.4 2,731,210 + HP15_2581 0.18 -2.7 2,731,210 + HP15_2581 0.18 -2.0 2,731,223 - HP15_2581 0.19 -5.9 2,731,324 + HP15_2581 0.22 -2.6 2,731,388 + HP15_2581 0.25 -2.7 2,731,495 + HP15_2581 0.28 -0.3 2,731,503 - HP15_2581 0.29 -3.6 2,731,558 + HP15_2581 0.31 -4.1 2,731,708 - HP15_2581 0.36 -4.8 2,731,839 + HP15_2581 0.41 -3.4 2,731,891 + HP15_2581 0.43 -1.2 2,731,995 + HP15_2581 0.46 -3.4 2,732,054 - HP15_2581 0.48 -4.3 2,732,211 - HP15_2581 0.54 -3.3 2,732,339 + HP15_2581 0.59 -3.4 2,732,420 + HP15_2581 0.61 -2.9 2,732,433 - HP15_2581 0.62 -1.4 2,732,489 - HP15_2581 0.64 -3.4 2,732,609 + HP15_2581 0.68 +0.1 2,732,664 - HP15_2581 0.70 -3.3 2,733,259 + -1.5 2,733,259 + -5.1 2,733,421 + +0.7 2,733,448 - -1.8 2,733,448 - -3.5 2,733,459 + -0.4 2,733,520 + -2.9 2,733,672 + HP15_2582 0.47 -4.3 2,733,710 + HP15_2582 0.57 -2.2 2,733,720 - HP15_2582 0.60 -1.5 2,733,728 - HP15_2582 0.62 -3.2 2,733,922 - -2.8 2,733,959 + -5.7 2,734,328 - HP15_2583 0.31 -2.1 2,734,422 + HP15_2583 0.37 -3.3
Or see this region's nucleotide sequence